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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52786 (42 seq.)
>W1710873090
LMMN01000009
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
12179
12090
-
Ser
CGA
[ENA]
¡û
>W1710873234
LMMQ01000019
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
21948
21859
-
Ser
CGA
[ENA]
¡û
>W1710874370
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
141999
141910
-
Ser
CGA
[ENA]
¡û
>W1710874427
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
275439
275350
-
Ser
CGA
[ENA]
¡û
>W1710874475
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
90159
90070
-
Ser
CGA
[ENA]
¡û
>W1710874586
LMNS01000037
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
131185
131274
+
Ser
CGA
[ENA]
¡û
>W1711073787
LSIX01000921
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
3543
3632
+
Ser
CGA
[ENA]
¡û
>W1711073789
LSIX01001000
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
11627
11538
-
Ser
CGA
[ENA]
¡û
>W1711078680
LSNC01000044
Alphaproteobacteria
Methylorubrum populi [LSNC]
88167
88256
+
Ser
CGA
[ENA]
¡û
>W1711571739
MNAO01000021
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
2284
2195
-
Ser
CGA
[ENA]
¡û
>W131051710
AMXU01000003
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
61195
61284
+
Ser
CGA
[ENA]
¡û
>C171092143
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
1276750
1276839
+
Ser
CGA
-
¡û
>C171115224
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
1829291
1829202
-
Ser
CGA
-
¡û
>w001825
AAAP01003089
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
1092
1183
+
Ser
CGA
[ENA]
¡û
>W08002394
ABEX01000004
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
154281
154370
+
Ser
CGA
[ENA]
¡û
>C08006532
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
308394
308308
-
Ser
CGA
[Ensembl]
¡û
>C08006680
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
371051
370965
-
Ser
CGA
[Ensembl]
¡û
>C181000393
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
352895
352806
-
Ser
CGA
-
¡û
>C181175680
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
256895
256806
-
Ser
CGA
-
¡û
>C181180069
CP029551
Alphaproteobacteria
Methylobacterium radiodurans 17Sr1-43 [CP029551]
2434175
2434086
-
Ser
CGA
-
¡û
>C181227831
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
58653
58742
+
Ser
CGA
-
¡û
>W09106858
ABEC01000005
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
217684
217595
-
Ser
CGA
[ENA]
¡û
>W09107169
ABFR01000001
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
5782
5693
-
Ser
CGA
[ENA]
¡û
>C09107461
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
297117
297028
-
Ser
CGA
[Ensembl]
¡û
>C09107548
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
146122
146033
-
Ser
CGA
[Ensembl]
¡û
>C09107649
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
174721
174632
-
Ser
CGA
[Ensembl]
¡û
>W1810658553
QJJJ01000013
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
16457
16368
-
Ser
CGA
[ENA]
¡û
>W1810658587
QJJK01000005
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
80109
80020
-
Ser
CGA
[ENA]
¡û
>SRA1014564
SRR023845.201923
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
219
130
-
Ser
CGA
[SRA]
>C161005008
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
162701
162612
-
Ser
CGA
[Ensembl]
¡û
>W121010659
AGJK01000012
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
17728
17639
-
Ser
CGA
[ENA]
¡û
>W1610043189
BAZP01001360
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
330
241
-
Ser
CGA
[ENA]
¡û
>W1610735436
LMMN01000009
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
12179
12090
-
Ser
CGA
[ENA]
¡û
>W1610735580
LMMQ01000019
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
21948
21859
-
Ser
CGA
[ENA]
¡û
>W1610736716
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
141999
141910
-
Ser
CGA
[ENA]
¡û
>W1610736773
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
275439
275350
-
Ser
CGA
[ENA]
¡û
>W1610736821
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
90159
90070
-
Ser
CGA
[ENA]
¡û
>W1610736932
LMNS01000037
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
131185
131274
+
Ser
CGA
[ENA]
¡û
>W1610913092
LSIX01000921
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
3543
3632
+
Ser
CGA
[ENA]
¡û
>W1610913094
LSIX01001000
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
11627
11538
-
Ser
CGA
[ENA]
¡û
>W1610917590
LSNC01000044
Alphaproteobacteria
Methylorubrum populi [LSNC]
88167
88256
+
Ser
CGA
[ENA]
¡û
>W1710040349
BAZP01001360
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
330
241
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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