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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52927 (13 seq.)
>W1711476717
MJVX01000017
Campylobacterota
Campylobacter lari [MJVX]
138897
138984
+
Ser
GGA
[ENA]
¡û
>C171118637
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
27003
26916
-
Ser
GGA
-
¡û
>w005230
AAFK01000002
Campylobacterota
Campylobacter lari RM2100 [AAFK]
21596
21685
+
Ser
GGA
[ENA]
¡û
>WENV170658035
JTFP01047762
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
600
687
+
Ser
GGA
[ENA]
¢þ
>C181078362
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
18603
18516
-
Ser
GGA
-
¡û
>C191211217
LR134471
Campylobacterota
Campylobacter insulaenigrae NCTC12927 [LR134471]
104117
104204
+
Ser
GGA
-
¡û
>C09103360
CP000932
Campylobacterota
Campylobacter lari RM2100 RM2100; ATCC BAA-1060D [CP000932]
115364
115451
+
Ser
GGA
[Ensembl]
¡û
>C151034048
CP007769
Campylobacterota
Campylobacter sp. RM16704 [CP007769]
114675
114762
+
Ser
GGA
[Ensembl]
¡û
>C151034225
CP007773
Campylobacterota
Campylobacter subantarcticus LMG 24377 [CP007773]
120375
120462
+
Ser
GGA
[Ensembl]
¡û
>C10111348
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
14867
14780
-
Ser
GGA
[Ensembl]
¡û
>W1511327820
JQIP01000036
Campylobacterota
Sulfurovum sp. AS07-7 [JQIP]
142411
142498
+
Ser
GGA
[ENA]
¡û
>W1511365466
JSEC01000003
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
294350
294263
-
Ser
GGA
[ENA]
¡û
>C161001396
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
261696
261783
+
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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