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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53200 (85 seq.)
>W1711736017
MTZT01000001
Bacillota
Lactobacillus gasseri [MTZT]
1105619
1105532
-
Leu
TAA
[ENA]
¡û
>C171121944
CP021704
Bacillota
Lactobacillus johnsonii UMNLJ22 [CP021704]
122831
122744
-
Leu
TAA
-
¡û
>C171121968
CP021704
Bacillota
Lactobacillus johnsonii UMNLJ22 [CP021704]
108379
108292
-
Leu
TAA
-
¡û
>C011871
AE017198
Bacillota
Lactobacillus johnsonii NCC 533 [AE017198]
1680483
1680398
-
Leu
TAA
[Ensembl]
¡û
>C011895
AE017198
Bacillota
Lactobacillus johnsonii NCC 533 [AE017198]
1666034
1665949
-
Leu
TAA
[Ensembl]
¡û
>WENV180186231
OAWU01007060
[OAWU] human gut metagenome; faeces
521
434
-
Leu
TAA
[ENA]
¢þ
>WENV180195232
OAZY01004197
[OAZY] human gut metagenome; faeces
521
434
-
Leu
TAA
[ENA]
¢þ
>WENV180233471
OBCP01000634
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
488
575
+
Leu
TAA
[ENA]
¢þ
>WENV180410633
OBUX01000610
[OBUX] human gut metagenome; faeces
8421
8334
-
Leu
TAA
[ENA]
¢þ
>WENV180569970
OCLR01001096
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
953
1040
+
Leu
TAA
[ENA]
¢þ
>WENV180598419
OCPM01001023
[OCPM] human gut metagenome; faeces
469
556
+
Leu
TAA
[ENA]
¢þ
>WENV180640200
OCRL01000930
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
67
154
+
Leu
TAA
[ENA]
¢þ
>WENV180641136
OCRM01000801
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
2050
1963
-
Leu
TAA
[ENA]
¢þ
>WENV181013037
ODWM01000304
[ODWM] human metagenome; G_DNA_Posterior fornix
497
584
+
Leu
TAA
[ENA]
¢þ
>WENV181014729
ODWO01000142
[ODWO] human metagenome; G_DNA_Posterior fornix
521
434
-
Leu
TAA
[ENA]
¢þ
>WENV181242129
OFFF01042951
[OFFF] mouse gut metagenome; faeces
410
497
+
Leu
TAA
[ENA]
¢þ
>WENV181253518
OFFQ01011701
[OFFQ] mouse gut metagenome; faeces
410
497
+
Leu
TAA
[ENA]
¢þ
>WENV181255866
OFFS01052969
[OFFS] mouse gut metagenome; faeces
87
174
+
Leu
TAA
[ENA]
¢þ
>WENV181262620
OFFY01012885
[OFFY] mouse gut metagenome; faeces
488
575
+
Leu
TAA
[ENA]
¢þ
>WENV181269933
OFGE01014367
[OFGE] mouse gut metagenome; faeces
2776
2689
-
Leu
TAA
[ENA]
¢þ
>WENV181273828
OFGH01011645
[OFGH] mouse gut metagenome; faeces
2426
2339
-
Leu
TAA
[ENA]
¢þ
>WENV181281167
OFGO01013658
[OFGO] mouse gut metagenome; faeces
2224
2137
-
Leu
TAA
[ENA]
¢þ
>WENV181299381
OFHM01006612
[OFHM] mouse gut metagenome; faeces
66
153
+
Leu
TAA
[ENA]
¢þ
>WENV182425879
OIHN01000011
[OIHN] human gut metagenome; human gut
31414
31501
+
Leu
TAA
[ENA]
¢þ
>WENV182429633
OIIC01022021
[OIIC] human gut metagenome; human gut
701
614
-
Leu
TAA
[ENA]
¢þ
>W141244247
CAKE01000032
Bacillota
Lactobacillus hominis CRBIP 24.179 [CAKE]
448
535
+
Leu
TAA
[ENA]
¡û
>WENV182477550
OIQL01000935
[OIQL] human gut metagenome; human gut
5088
5175
+
Leu
TAA
[ENA]
¢þ
>WENV182480022
OIQW01000125
[OIQW] human gut metagenome; human gut
6821
6734
-
Leu
TAA
[ENA]
¢þ
>WENV182481478
OIRB01005755
[OIRB] human gut metagenome; human gut
470
557
+
Leu
TAA
[ENA]
¢þ
>WENV182487865
OIRX01008991
[OIRX] human gut metagenome; human gut
521
434
-
Leu
TAA
[ENA]
¢þ
>WENV182488304
OIRZ01002848
[OIRZ] human gut metagenome; human gut
67
154
+
Leu
TAA
[ENA]
¢þ
>WENV182491315
OISK01000033
[OISK] human gut metagenome; human gut
424
511
+
Leu
TAA
[ENA]
¢þ
>WENV182503274
OIUO01000754
[OIUO] human gut metagenome; human gut
6975
6888
-
Leu
TAA
[ENA]
¢þ
>WENV182505564
OIUY01000046
[OIUY] human gut metagenome; human gut
67
154
+
Leu
TAA
[ENA]
¢þ
>WENV182506070
OIUZ01002978
[OIUZ] human gut metagenome; human gut
67
154
+
Leu
TAA
[ENA]
¢þ
>WENV182819155
OKAA01002102
[OKAA] human gut metagenome; human gut
850
763
-
Leu
TAA
[ENA]
¢þ
>WENV182831505
OKEE01007373
[OKEE] human gut metagenome; human gut
521
434
-
Leu
TAA
[ENA]
¢þ
>WENV182941390
OKVG01001582
[OKVG] human gut metagenome; human gut
8618
8531
-
Leu
TAA
[ENA]
¢þ
>WENV183011657
OLEA01000020
[OLEA] human gut metagenome; human gut
2129
2042
-
Leu
TAA
[ENA]
¢þ
>WENV183018291
OLEY01003045
[OLEY] human gut metagenome; human gut
67
154
+
Leu
TAA
[ENA]
¢þ
>WENV183494031
OMGJ01033062
[OMGJ] human gut metagenome; human gut
239
152
-
Leu
TAA
[ENA]
¢þ
>WENV183556010
OOBN01045586
[OOBN] human gut metagenome; human gut
313
226
-
Leu
TAA
[ENA]
¢þ
>C181005359
CP006803
Bacillota
Lactobacillus gasseri DSM 14869 [CP006803]
1841666
1841753
+
Leu
TAA
-
¡û
>C181005383
CP006803
Bacillota
Lactobacillus gasseri DSM 14869 [CP006803]
1856075
1856162
+
Leu
TAA
-
¡û
>C191003362
AP018549
Bacillota
Lactobacillus paragasseri JCM 5343 [AP018549]
1611599
1611512
-
Leu
TAA
-
¡û
>C191003385
AP018549
Bacillota
Lactobacillus paragasseri JCM 5343 [AP018549]
1597453
1597366
-
Leu
TAA
-
¡û
>C191206741
LR134325
Bacillota
Lactobacillus paragasseri NCTC13720 [LR134325]
1637873
1637786
-
Leu
TAA
-
¡û
>C191206764
LR134325
Bacillota
Lactobacillus paragasseri NCTC13720 [LR134325]
1623716
1623629
-
Leu
TAA
-
¡û
>W1910901139
NGNW01000138
Bacillota
Lactobacillus taiwanensis 609r [NGNW]
560
647
+
Leu
TAA
[ENA]
¡û
>W1910901171
NGNX01000014
Bacillota
Lactobacillus taiwanensis 609q [NGNX]
560
647
+
Leu
TAA
[ENA]
¡û
>W1910901230
NGNY01000037
Bacillota
Lactobacillus taiwanensis 609h [NGNY]
11173
11086
-
Leu
TAA
[ENA]
¡û
>W1910901321
NGOA01000008
Bacillota
Lactobacillus taiwanensis 601c [NGOA]
11446
11359
-
Leu
TAA
[ENA]
¡û
>W1910901392
NGOB01000045
Bacillota
Lactobacillus taiwanensis 601b [NGOB]
10306
10219
-
Leu
TAA
[ENA]
¡û
>W1910901443
NGOC01000017
Bacillota
Lactobacillus taiwanensis 601a [NGOC]
11446
11359
-
Leu
TAA
[ENA]
¡û
>W1910901491
NGOD01000012
Bacillota
Lactobacillus johnsonii 117x [NGOD]
560
647
+
Leu
TAA
[ENA]
¡û
>W1910901644
NGOG01000014
Bacillota
Lactobacillus johnsonii 117d [NGOG]
560
647
+
Leu
TAA
[ENA]
¡û
>W1910901705
NGOH01000051
Bacillota
Lactobacillus johnsonii 117c [NGOH]
560
647
+
Leu
TAA
[ENA]
¡û
>W1910901815
NGOJ01000053
Bacillota
Lactobacillus taiwanensis 114t [NGOJ]
10306
10219
-
Leu
TAA
[ENA]
¡û
>W1910901857
NGOK01000026
Bacillota
Lactobacillus taiwanensis 114f [NGOK]
11270
11183
-
Leu
TAA
[ENA]
¡û
>W1910901900
NGOL01000004
Bacillota
Lactobacillus taiwanensis 114e [NGOL]
11271
11184
-
Leu
TAA
[ENA]
¡û
>W1910902020
NGON01000051
Bacillota
Lactobacillus taiwanensis 111w [NGON]
560
647
+
Leu
TAA
[ENA]
¡û
>W1910902051
NGOO01000002
Bacillota
Lactobacillus taiwanensis 111u [NGOO]
560
647
+
Leu
TAA
[ENA]
¡û
>W1910902105
NGOP01000004
Bacillota
Lactobacillus taiwanensis 111o [NGOP]
11091
11004
-
Leu
TAA
[ENA]
¡û
>W1910902154
NGOQ01000002
Bacillota
Lactobacillus taiwanensis 111m [NGOQ]
10461
10374
-
Leu
TAA
[ENA]
¡û
>W1910902325
NGOT01000015
Bacillota
Lactobacillus taiwanensis 107u [NGOT]
10306
10219
-
Leu
TAA
[ENA]
¡û
>W1910902386
NGOU01000159
Bacillota
Lactobacillus taiwanensis 107q [NGOU]
10306
10219
-
Leu
TAA
[ENA]
¡û
>W1910902428
NGOV01000058
Bacillota
Lactobacillus taiwanensis 107d [NGOV]
10306
10219
-
Leu
TAA
[ENA]
¡û
>W1910902480
NGOW01000018
Bacillota
Lactobacillus taiwanensis 103q [NGOW]
11155
11068
-
Leu
TAA
[ENA]
¡û
>W1910902580
NGOY01000008
Bacillota
Lactobacillus taiwanensis 103j [NGOY]
10835
10748
-
Leu
TAA
[ENA]
¡û
>W1910902642
NGOZ01000023
Bacillota
Lactobacillus taiwanensis 103a [NGOZ]
8039
7952
-
Leu
TAA
[ENA]
¡û
>W1910918555
NIBD01000051
Bacillota
Lactobacillus johnsonii UMNLJ114 [NIBD]
1046
959
-
Leu
TAA
[ENA]
¡û
>W1911570298
PCZK01000018
Bacillota
Lactobacillus johnsonii UMNLJ94 [PCZK]
518
605
+
Leu
TAA
[ENA]
¡û
>W1911594844
PNFW01000039
Bacillota
Lactobacillus gasseri UMB0045b [PNFW]
5876
5963
+
Leu
TAA
[ENA]
¡û
>W1911595898
PNGR01000004
Bacillota
Lactobacillus gasseri UMB0056 [PNGR]
576
663
+
Leu
TAA
[ENA]
¡û
>W1810001293
BEXG01000015
Bacillota
Lactobacillus paragasseri JCM 1130 [BEXG]
832
745
-
Leu
TAA
[ENA]
¡û
>W1810001412
BEXJ01000007
Bacillota
Lactobacillus gasseri JCM 1025 [BEXJ]
551
638
+
Leu
TAA
[ENA]
¡û
>W1810190738
PKKB01000035
Bacillota
Lactobacillus gasseri UMB0670 [PKKB]
569
656
+
Leu
TAA
[ENA]
¡û
>C10108410
FN298497
Bacillota
Lactobacillus johnsonii FI9785 [FN298497]
1490321
1490234
-
Leu
TAA
[Ensembl]
¡û
>W1511444115
JUTQ01000022
Bacillota
Lactobacillus gasseri 770_LJOH [JUTQ]
698
611
-
Leu
TAA
[ENA]
¡û
>W1511463507
JVOU01000014
Bacillota
Lactobacillus gasseri 240_LCRI [JVOU]
698
611
-
Leu
TAA
[ENA]
¡û
>W121081313
AKFQ01000022
Bacillota
Lactobacillus gasseri CECT 5714 [AKFQ]
968
881
-
Leu
TAA
[ENA]
¡û
>W1610032010
AYZG01000035
Bacillota
Lactobacillus taiwanensis DSM 21401 [AYZG]
489
576
+
Leu
TAA
[ENA]
¡û
>W1610032409
AYZP01000038
Bacillota
Lactobacillus hominis DSM 23910 = CRBIP 24.179 [AYZP]
814
727
-
Leu
TAA
[ENA]
¡û
>W1610033468
AZCY01000024
Bacillota
Lactobacillus johnsonii ATCC 33200 [AZCY]
464
551
+
Leu
TAA
[ENA]
¡û
>W1710028937
AYZG01000035
Bacillota
Lactobacillus taiwanensis DSM 21401 [AYZG]
489
576
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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