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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53901 (46 seq.)
>A171000741
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
2903629
2903714
+
Leu
GAG
-
¡û
>A171001295
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
1182421
1182505
+
Leu
GAG
-
¡û
>A171003111
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
2127545
2127461
-
Leu
GAG
-
¡û
>A171006687
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
663108
663192
+
Leu
GAG
-
¡û
>A171006729
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
690617
690701
+
Leu
GAG
-
¡û
>A171006900
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
322403
322318
-
Leu
GAG
-
¡û
>A171007242
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
2756823
2756908
+
Leu
GAG
-
¡û
>WENV170008695
APHM01001812
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1282
1195
-
Leu
GAG
[ENA]
¢þ
>WENV170660834
JXWU01042249
[JXWU] soil metagenome; rice field; organic control Plot
185
269
+
Leu
GAG
[ENA]
¢þ
>WENV170661222
JXWU01134225
[JXWU] soil metagenome; rice field; organic control Plot
147
232
+
Leu
GAG
[ENA]
¢þ
>WENV170702079
LKMJ01000456
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7476
7389
-
Leu
GAG
[ENA]
¢þ
>WENV170702190
LKMJ01000825
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18565
18478
-
Leu
GAG
[ENA]
¢þ
>WENV170702419
LKMJ01001843
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7032
6948
-
Leu
GAG
[ENA]
¢þ
>WENV170702444
LKMJ01001960
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4655
4571
-
Leu
GAG
[ENA]
¢þ
>WENV170702697
LKMJ01003564
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8619
8703
+
Leu
GAG
[ENA]
¢þ
>WENV170702890
LKMJ01004542
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9012
8928
-
Leu
GAG
[ENA]
¢þ
>WENV170702997
LKMJ01005322
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12011
12098
+
Leu
GAG
[ENA]
¢þ
>WENV170703019
LKMJ01005678
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6048
5963
-
Leu
GAG
[ENA]
¢þ
>WENV170703932
LKMJ01019167
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5735
5819
+
Leu
GAG
[ENA]
¢þ
>W1910175084
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
208290
208374
+
Leu
GAG
[ENA]
¡û
>W1910230251
FOKW01000008
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
145609
145693
+
Leu
GAG
[ENA]
¡û
>W1910230838
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
981939
981855
-
Leu
GAG
[ENA]
¡û
>W1910568543
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
47557
47641
+
Leu
GAG
[ENA]
¡û
>W1910617601
LIUF01000003
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
330226
330141
-
Leu
GAG
[ENA]
¡û
>W1910696275
MEIH01000087
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
7748
7664
-
Leu
GAG
[ENA]
¡û
>W1911493145
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
609825
609741
-
Leu
GAG
[ENA]
¡û
>W1911696809
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
1164649
1164565
-
Leu
GAG
[ENA]
¡û
>W1911709172
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
2585759
2585675
-
Leu
GAG
[ENA]
¡û
>W1911709883
QPMJ01000002
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
395806
395722
-
Leu
GAG
[ENA]
¡û
>W1911769986
QXIJ01000004
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
250594
250510
-
Leu
GAG
[ENA]
¡û
>W1911770028
QXIK01000004
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
338657
338742
+
Leu
GAG
[ENA]
¡û
>W1610000797
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1734070
1734154
+
Leu
GAG
[ENA]
¡û
>W1610002962
AEMG01000004
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
197206
197290
+
Leu
GAG
[ENA]
¡û
>W1610003262
AFNT02000007
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
103032
103119
+
Leu
GAG
[ENA]
¡û
>W1610011916
AOHW01000035
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
84672
84588
-
Leu
GAG
[ENA]
¡û
>W1610012148
AOIB01000043
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
182647
182731
+
Leu
GAG
[ENA]
¡û
>W1610012331
AOIJ01000038
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
21507
21591
+
Leu
GAG
[ENA]
¡û
>W1610012466
AOIM01000013
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
34833
34749
-
Leu
GAG
[ENA]
¡û
>W1610012675
AOIR01000048
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
144689
144605
-
Leu
GAG
[ENA]
¡û
>W1610014309
AOLX01000014
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
298964
299049
+
Leu
GAG
[ENA]
¡û
>W1610014440
AOLZ01000075
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
15501
15417
-
Leu
GAG
[ENA]
¡û
>W1610018835
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
1031678
1031762
+
Leu
GAG
[ENA]
¡û
>W1610061926
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
768089
768005
-
Leu
GAG
[ENA]
¡û
>W1610671389
LKCV01000277
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
616
532
-
Leu
GAG
[ENA]
¡û
>W1610682292
LKMR01000018
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
9012
8928
-
Leu
GAG
[ENA]
¡û
>W1610682627
LKNF01000061
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
796
880
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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