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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.54088 (69 seq.)
>W131158389
AQUA01000002
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
81834
81747
-
Ser
GGA
[ENA]
¡û
>WENV180111363
OAPN01068983
[OAPN] marine metagenome; 2011
313
226
-
Ser
GGA
[ENA]
¢þ
>WENV180112952
OAPP01195121
[OAPP] marine metagenome; Surface water
292
205
-
Ser
GGA
[ENA]
¢þ
>WENV017035
AACY020475285
Marine microbial communities from Global Ocean Sampling (GOS)
1623
1712
+
Ser
GGA
[ENA]
>WENV180357322
OBNN01002257
[OBNN] marine metagenome; Coastal water
447
360
-
Ser
GGA
[ENA]
¢þ
>WENV180377119
OBON01000748
[OBON] marine metagenome; sea water
3011
3096
+
Ser
GGA
[ENA]
¢þ
>WENV180377582
OBON01053216
[OBON] marine metagenome; sea water
433
518
+
Ser
GGA
[ENA]
¢þ
>WENV181368355
OFQL01001121
[OFQL] freshwater metagenome; Freshwater Lake
483
570
+
Ser
GGA
[ENA]
¢þ
>WENV181368914
OFQN01003685
[OFQN] freshwater metagenome; Freshwater Lake
656
569
-
Ser
GGA
[ENA]
¢þ
>WENV181369440
OFQP01002112
[OFQP] freshwater metagenome; Freshwater Lake
1707
1620
-
Ser
GGA
[ENA]
¢þ
>WENV181369869
OFQR01001027
[OFQR] freshwater metagenome; Freshwater Lake
1246
1161
-
Ser
GGA
[ENA]
¢þ
>WENV181370230
OFQS01000938
[OFQS] freshwater metagenome; Freshwater Lake
1255
1168
-
Ser
GGA
[ENA]
¢þ
>WENV181370745
OFQT01007735
[OFQT] freshwater metagenome; Freshwater Lake
391
478
+
Ser
GGA
[ENA]
¢þ
>WENV181379812
OFRD01009808
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1345
1430
+
Ser
GGA
[ENA]
¢þ
>WENV181384069
OFRH01013688
[OFRH] wastewater metagenome; Exp Tend NO 100WW
167
80
-
Ser
GGA
[ENA]
¢þ
>WENV181386485
OFRL01004984
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1439
1352
-
Ser
GGA
[ENA]
¢þ
>WENV181395720
OFSB01000871
[OFSB] freshwater metagenome; Freshwater Lake
839
924
+
Ser
GGA
[ENA]
¢þ
>WENV181399117
OFSE01011036
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1215
1302
+
Ser
GGA
[ENA]
¢þ
>W141170884
AXZA01000019
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
84239
84152
-
Ser
GGA
[ENA]
¡û
>WENV181836055
OGVJ01000237
[OGVJ] freshwater metagenome; freshwater
298
211
-
Ser
GGA
[ENA]
¢þ
>WENV181836156
OGVJ01001271
[OGVJ] freshwater metagenome; freshwater
1530
1615
+
Ser
GGA
[ENA]
¢þ
>WENV181843236
OGVU01004067
[OGVU] freshwater metagenome; freshwater
769
682
-
Ser
GGA
[ENA]
¢þ
>WENV181848121
OGVZ01002271
[OGVZ] freshwater metagenome; freshwater
2208
2295
+
Ser
GGA
[ENA]
¢þ
>WENV181849084
OGVZ01051431
[OGVZ] freshwater metagenome; freshwater
215
130
-
Ser
GGA
[ENA]
¢þ
>WENV181856708
OGWN01011355
[OGWN] freshwater metagenome; freshwater
692
607
-
Ser
GGA
[ENA]
¢þ
>WENV182865937
OKRQ01007242
[OKRQ] freshwater metagenome; freshwater
277
192
-
Ser
GGA
[ENA]
¢þ
>WENV182866051
OKRQ01015322
[OKRQ] freshwater metagenome; freshwater
365
278
-
Ser
GGA
[ENA]
¢þ
>C181018677
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
307549
307462
-
Ser
GGA
-
¡û
>C181020967
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1258350
1258437
+
Ser
GGA
-
¡û
>C181021039
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1221846
1221933
+
Ser
GGA
-
¡û
>C181021187
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1218228
1218315
+
Ser
GGA
-
¡û
>C181021301
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1160900
1160985
+
Ser
GGA
-
¡û
>WENV021997
AACY020614219
Marine microbial communities from Global Ocean Sampling (GOS)
99
10
-
Ser
GGA
[ENA]
>WENV022321
AACY020640888
Marine microbial communities from Global Ocean Sampling (GOS)
177
88
-
Ser
GGA
[ENA]
>WENV022538
AACY020657236
Marine microbial communities from Global Ocean Sampling (GOS)
550
463
-
Ser
GGA
[ENA]
>WENV022954
AACY020686114
Marine microbial communities from Global Ocean Sampling (GOS)
382
295
-
Ser
GGA
[ENA]
>WENV023088
AACY020697676
Marine microbial communities from Global Ocean Sampling (GOS)
122
33
-
Ser
GGA
[ENA]
>WENV023329
AACY020717741
Marine microbial communities from Global Ocean Sampling (GOS)
513
600
+
Ser
GGA
[ENA]
>WENV024452
AACY020807811
Marine microbial communities from Global Ocean Sampling (GOS)
275
186
-
Ser
GGA
[ENA]
>WENV026064
AACY020937096
Marine microbial communities from Global Ocean Sampling (GOS)
535
448
-
Ser
GGA
[ENA]
>WENV026212
AACY020948499
Marine microbial communities from Global Ocean Sampling (GOS)
641
554
-
Ser
GGA
[ENA]
>WENV027273
AACY021032755
Marine microbial communities from Global Ocean Sampling (GOS)
123
212
+
Ser
GGA
[ENA]
>WENV027566
AACY021054346
Marine microbial communities from Global Ocean Sampling (GOS)
274
185
-
Ser
GGA
[ENA]
>WENV029879
AACY021237078
Marine microbial communities from Global Ocean Sampling (GOS)
803
890
+
Ser
GGA
[ENA]
>WENV030509
AACY021288407
Marine microbial communities from Global Ocean Sampling (GOS)
321
408
+
Ser
GGA
[ENA]
>WENV032241
AACY021429147
Marine microbial communities from Global Ocean Sampling (GOS)
433
520
+
Ser
GGA
[ENA]
>WENV033730
AACY021550698
Marine microbial communities from Global Ocean Sampling (GOS)
558
471
-
Ser
GGA
[ENA]
>WENV035829
AACY021727924
Marine microbial communities from Global Ocean Sampling (GOS)
712
625
-
Ser
GGA
[ENA]
>WENV038924
AACY021971522
Marine microbial communities from Global Ocean Sampling (GOS)
742
829
+
Ser
GGA
[ENA]
>WENV039304
AACY021999204
Marine microbial communities from Global Ocean Sampling (GOS)
315
228
-
Ser
GGA
[ENA]
>WENV039818
AACY022038373
Marine microbial communities from Global Ocean Sampling (GOS)
593
682
+
Ser
GGA
[ENA]
>WENV043341
AACY022313335
Marine microbial communities from Global Ocean Sampling (GOS)
226
313
+
Ser
GGA
[ENA]
>WENV045768
AACY022547102
Marine microbial communities from Global Ocean Sampling (GOS)
84
171
+
Ser
GGA
[ENA]
>WENV047252
AACY022650562
Marine microbial communities from Global Ocean Sampling (GOS)
219
306
+
Ser
GGA
[ENA]
>WENV048797
AACY022753581
Marine microbial communities from Global Ocean Sampling (GOS)
282
195
-
Ser
GGA
[ENA]
>WENV048821
AACY022754410
Marine microbial communities from Global Ocean Sampling (GOS)
195
284
+
Ser
GGA
[ENA]
>WENV048939
AACY022760743
Marine microbial communities from Global Ocean Sampling (GOS)
450
539
+
Ser
GGA
[ENA]
>WENV057332
AACY023291618
Marine microbial communities from Global Ocean Sampling (GOS)
723
812
+
Ser
GGA
[ENA]
>WENV057449
AACY023295159
Marine microbial communities from Global Ocean Sampling (GOS)
358
269
-
Ser
GGA
[ENA]
>WENV058068
AACY023316480
Marine microbial communities from Global Ocean Sampling (GOS)
1073
986
-
Ser
GGA
[ENA]
>WENV058618
AACY023335756
Marine microbial communities from Global Ocean Sampling (GOS)
1006
1095
+
Ser
GGA
[ENA]
>WENV058642
AACY023336822
Marine microbial communities from Global Ocean Sampling (GOS)
1238
1325
+
Ser
GGA
[ENA]
>WENV061429
AACY023431631
Marine microbial communities from Global Ocean Sampling (GOS)
605
692
+
Ser
GGA
[ENA]
>WENV061435
AACY023431982
Marine microbial communities from Global Ocean Sampling (GOS)
770
859
+
Ser
GGA
[ENA]
>WENV061584
AACY023435014
Marine microbial communities from Global Ocean Sampling (GOS)
974
1063
+
Ser
GGA
[ENA]
>WENV061903
AACY023443705
Marine microbial communities from Global Ocean Sampling (GOS)
1393
1306
-
Ser
GGA
[ENA]
>WENV061985
AACY023445970
Marine microbial communities from Global Ocean Sampling (GOS)
1204
1293
+
Ser
GGA
[ENA]
>WENV062068
AACY023447102
Marine microbial communities from Global Ocean Sampling (GOS)
554
467
-
Ser
GGA
[ENA]
>WENV075063
AACY024009341
Marine microbial communities from Global Ocean Sampling (GOS)
1390
1477
+
Ser
GGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK