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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.54728 (41 seq.)
>A171004653
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
823882
823795
-
Leu
GAG
-
¡û
>A171004654
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
823677
823592
-
Leu
GAG
-
¡û
>A171004955
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3128635
3128548
-
Leu
GAG
-
¡û
>A171005005
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3083333
3083246
-
Leu
GAG
-
¡û
>A171005057
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3162617
3162530
-
Leu
GAG
-
¡û
>A171005099
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
3221555
3221642
+
Leu
GAG
-
¡û
>A171005196
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
831106
831193
+
Leu
GAG
-
¡û
>A171005197
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
831304
831389
+
Leu
GAG
-
¡û
>At1520
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2560527
2560614
+
Leu
GAG
[Ensembl]
¡û
>WENV170784228
MCHG01000167
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
32417
32504
+
Leu
GAG
[ENA]
¢þ
>WENV170784229
MCHG01000167
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
32598
32683
+
Leu
GAG
[ENA]
¢þ
>W1910569234
JJOR01000060
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
23925
24012
+
Leu
GAG
[ENA]
¡û
>W1910569516
JJOW01000235
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
3
90
+
Leu
GAG
[ENA]
¡û
>W1910569517
JJOW01000235
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
202
289
+
Leu
GAG
[ENA]
¡û
>W1910569529
JJOX01000019
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
6468
6555
+
Leu
GAG
[ENA]
¡û
>W1910569610
JJOY01000039
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
54681
54594
-
Leu
GAG
[ENA]
¡û
>W1910569771
JJPB01000120
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
95321
95408
+
Leu
GAG
[ENA]
¡û
>W1910569807
JJPC01000050
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
3018
3105
+
Leu
GAG
[ENA]
¡û
>W1910569855
JJPD01000110
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
76979
77066
+
Leu
GAG
[ENA]
¡û
>W1910570260
JJPL01000062
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
29867
29954
+
Leu
GAG
[ENA]
¡û
>W1910570301
JJPM01000034
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
1561
1648
+
Leu
GAG
[ENA]
¡û
>W1910570390
JJPN01000154
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
32348
32435
+
Leu
GAG
[ENA]
¡û
>W1910570421
JJPO01000087
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
52282
52369
+
Leu
GAG
[ENA]
¡û
>W1910570546
JJPQ01000181
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
49785
49698
-
Leu
GAG
[ENA]
¡û
>W1910570640
JJPS01000207
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
35244
35331
+
Leu
GAG
[ENA]
¡û
>W1910570656
JJPT01000029
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
23871
23958
+
Leu
GAG
[ENA]
¡û
>W1910570791
JJPV01000126
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
23929
24016
+
Leu
GAG
[ENA]
¡û
>W1910570810
JJPW01000013
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
466
379
-
Leu
GAG
[ENA]
¡û
>W1910570989
JJPZ01000135
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
57652
57739
+
Leu
GAG
[ENA]
¡û
>W1910571439
JJQI01000072
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
469
382
-
Leu
GAG
[ENA]
¡û
>W1910571494
JJQJ01000158
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
449
362
-
Leu
GAG
[ENA]
¡û
>W1910571535
JJQK01000154
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
29349
29436
+
Leu
GAG
[ENA]
¡û
>W1910571698
JJQN01000065
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
29807
29894
+
Leu
GAG
[ENA]
¡û
>W1910571859
JJQQ01000033
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
473
386
-
Leu
GAG
[ENA]
¡û
>W1910571922
JJQR01000064
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
2029
1942
-
Leu
GAG
[ENA]
¡û
>W1910571985
JJQS01000073
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
23938
24025
+
Leu
GAG
[ENA]
¡û
>W1910572039
JJQT01000216
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
1435
1522
+
Leu
GAG
[ENA]
¡û
>W1910572306
JJQZ01000054
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
23942
24029
+
Leu
GAG
[ENA]
¡û
>W1910572432
JJRB01000115
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
2029
1942
-
Leu
GAG
[ENA]
¡û
>W1910694785
MDTP02000068
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
32417
32504
+
Leu
GAG
[ENA]
¡û
>W1910694786
MDTP02000068
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
32598
32683
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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