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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.547841 (13 seq.)
>WENV181368503
OFQL01012623
[OFQL] freshwater metagenome; Freshwater Lake
472
399
-
Lys
TTT
[ENA]
¢þ
>WENV002000
AACY020056130
Marine microbial communities from Global Ocean Sampling (GOS)
761
686
-
Lys
TTT
[ENA]
>WENV170605958
FUWD010575134
[FUWD] metagenome; unknown
197
124
-
Lys
TTT
[ENA]
¢þ
>WENV170645506
JNSK01000026
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
39065
38992
-
Lys
TTT
[ENA]
¢þ
>WENV170645558
JNSK01000141
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
12712
12639
-
Lys
TTT
[ENA]
¢þ
>C181018650
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
340696
340769
+
Lys
TTT
-
¡û
>C181018686
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
383356
383429
+
Lys
TTT
-
¡û
>C181020860
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1333878
1333805
-
Lys
TTT
-
¡û
>C181021009
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1213322
1213249
-
Lys
TTT
-
¡û
>C181021269
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
1259522
1259449
-
Lys
TTT
-
¡û
>C181021382
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1282083
1282010
-
Lys
TTT
-
¡û
>WENV057467
AACY023295502
Marine microbial communities from Global Ocean Sampling (GOS)
246
171
-
Lys
TTT
[ENA]
>WENV057931
AACY023311887
Marine microbial communities from Global Ocean Sampling (GOS)
579
504
-
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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