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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56109 (11 seq.)
>W131161668
AQXX01000109
Gammaproteobacteria
Hahella ganghwensis DSM 17046 [AQXX]
64224
64311
+
Leu
TAA
[ENA]
¡û
>WENV170499282
CEVT01138684
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
193
280
+
Leu
TAA
[ENA]
¢þ
>WENV170805164
MDSW01060156
[MDSW] marine metagenome; seawater
3598
3685
+
Leu
TAA
[ENA]
¢þ
>C151093951
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
821295
821208
-
Leu
TAA
-
¡û
>C151094003
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
743019
742932
-
Leu
TAA
-
¡û
>C151094041
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
2032045
2031958
-
Leu
TAA
-
¡û
>C151094105
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
382426
382339
-
Leu
TAA
-
¡û
>C151094116
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
291727
291814
+
Leu
TAA
-
¡û
>C151094209
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
483453
483366
-
Leu
TAA
-
¡û
>C151094263
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
376208
376121
-
Leu
TAA
-
¡û
>C161041397
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
415175
415088
-
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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