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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56110 (26 seq.)
>W131238021
AUUA01000001
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
949761
949674
-
Ser
TGA
[ENA]
¡û
>WENV170685342
LFRM01085719
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
14856
14943
+
Ser
TGA
[ENA]
¢þ
>WENV170688273
LFRM01237019
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
30652
30739
+
Ser
TGA
[ENA]
¢þ
>WENV170691408
LFRM01396145
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
103
16
-
Ser
TGA
[ENA]
¢þ
>WENV170727101
LSQX01404872
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2018
1931
-
Ser
TGA
[ENA]
¢þ
>C181175833
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
1551270
1551357
+
Ser
TGA
-
¡û
>C181215535
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1565931
1566018
+
Ser
TGA
-
¡û
>W141710661
JMPN01000011
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [JMPN]
16445
16532
+
Ser
TGA
[ENA]
¡û
>W1910281661
FQXW01000001
Gammaproteobacteria
Nissabacter archeti 2134 [FQXW]
127233
127146
-
Ser
TGA
[ENA]
¡û
>W1810181811
PJZF01000001
Gammaproteobacteria
Chimaeribacter californicus 2015Iso6 [PJZF]
148301
148388
+
Ser
TGA
[ENA]
¡û
>W1810181888
PJZG01000001
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2013Iso5 [PJZG]
146850
146937
+
Ser
TGA
[ENA]
¡û
>W1810181961
PJZH01000001
Gammaproteobacteria
Chimaeribacter coloradensis 2016Iso4 [PJZH]
213822
213909
+
Ser
TGA
[ENA]
¡û
>W1810182045
PJZI01000003
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 [PJZI]
146488
146575
+
Ser
TGA
[ENA]
¡û
>W1810182116
PJZJ01000005
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso2 [PJZJ]
66815
66728
-
Ser
TGA
[ENA]
¡û
>W1810182180
PJZK01000001
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso1 [PJZK]
447748
447661
-
Ser
TGA
[ENA]
¡û
>W1810744618
QOVA01000020
Gammaproteobacteria
Edaphovirga cremea DSM 105170 [QOVA]
59018
58931
-
Ser
TGA
[ENA]
¡û
>C151093903
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
39065
39152
+
Ser
TGA
-
¡û
>C151093957
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
39288
39375
+
Ser
TGA
-
¡û
>C151094022
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1289655
1289742
+
Ser
TGA
-
¡û
>C151094090
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1999005
1999092
+
Ser
TGA
-
¡û
>C151094149
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1031592
1031505
-
Ser
TGA
-
¡û
>C151094186
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
2064587
2064674
+
Ser
TGA
-
¡û
>C151094238
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
2029132
2029219
+
Ser
TGA
-
¡û
>C161041371
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
2023413
2023500
+
Ser
TGA
[Ensembl]
¡û
>W1610607233
LFTS01000075
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
14856
14943
+
Ser
TGA
[ENA]
¡û
>W1710728520
LFTS01000075
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
14856
14943
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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