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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56119 (90 seq.)
>W1711617439
MPAM01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
47118
47205
+
Leu
AAG
[ENA]
¡û
>W1711617487
MPAN01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
1384
1297
-
Leu
AAG
[ENA]
¡û
>W1711617534
MPAO01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
79154
79241
+
Leu
AAG
[ENA]
¡û
>W1711617584
MPAP01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
79154
79241
+
Leu
AAG
[ENA]
¡û
>W1711617633
MPAQ01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
81434
81521
+
Leu
AAG
[ENA]
¡û
>W1711617750
MPAS01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
41114
41201
+
Leu
AAG
[ENA]
¡û
>W1711617783
MPAT01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
73433
73520
+
Leu
AAG
[ENA]
¡û
>W1711617850
MPAU01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
41046
41133
+
Leu
AAG
[ENA]
¡û
>W1711622358
MPEA01000053
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
31489
31402
-
Leu
AAG
[ENA]
¡û
>W1711622410
MPEB01000078
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
48055
48142
+
Leu
AAG
[ENA]
¡û
>W1711622459
MPEC01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
1206
1119
-
Leu
AAG
[ENA]
¡û
>W1711622488
MPED01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
98397
98484
+
Leu
AAG
[ENA]
¡û
>W1711622585
MPEF01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
98397
98484
+
Leu
AAG
[ENA]
¡û
>W1711622634
MPEG01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
97446
97533
+
Leu
AAG
[ENA]
¡û
>W1711622686
MPEH01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
73388
73475
+
Leu
AAG
[ENA]
¡û
>W1711622732
MPEI01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
98397
98484
+
Leu
AAG
[ENA]
¡û
>W1711622785
MPEJ01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
73416
73503
+
Leu
AAG
[ENA]
¡û
>W1711627207
MPLH01000041
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
5424
5337
-
Leu
AAG
[ENA]
¡û
>W1711627241
MPLI01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
304
217
-
Leu
AAG
[ENA]
¡û
>W1711627303
MPLJ01000014
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
2857
2944
+
Leu
AAG
[ENA]
¡û
>W1711627545
MPLO01000006
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
82307
82394
+
Leu
AAG
[ENA]
¡û
>W1711627615
MPLP01000009
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
82307
82394
+
Leu
AAG
[ENA]
¡û
>W1711627649
MPLQ01000006
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
304
217
-
Leu
AAG
[ENA]
¡û
>W1711627698
MPLR01000012
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
304
217
-
Leu
AAG
[ENA]
¡û
>C171019423
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
192475
192388
-
Leu
AAG
-
¡û
>C171032540
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
192292
192205
-
Leu
AAG
-
¡û
>C171037219
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
185420
185333
-
Leu
AAG
-
¡û
>C171038904
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
197303
197216
-
Leu
AAG
-
¡û
>C171111810
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
671816
671903
+
Leu
AAG
-
¡û
>C012161
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
197511
197424
-
Leu
AAG
[Ensembl]
¡û
>W141075646
ATAZ01000101
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
1406
1319
-
Leu
AAG
[ENA]
¡û
>W141292165
JAUJ01000006
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
42585
42498
-
Leu
AAG
[ENA]
¡û
>WENV183511475
OMJG01000416
[OMJG] food metagenome; Cotija cheese
1568
1483
-
Leu
AAG
[ENA]
¢þ
>C181003776
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
432694
432607
-
Leu
AAG
-
¡û
>C181003840
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
427815
427730
-
Leu
AAG
-
¡û
>C181054944
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
191952
191867
-
Leu
AAG
-
¡û
>C191019038
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
948305
948390
+
Leu
AAG
-
¡û
>C191135428
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
191952
191867
-
Leu
AAG
-
¡û
>C191137983
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
191951
191866
-
Leu
AAG
-
¡û
>C191146266
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
191949
191864
-
Leu
AAG
-
¡û
>C191155366
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
1703652
1703566
-
Leu
AAG
-
¡û
>W09127238
ACKV01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
85219
85306
+
Leu
AAG
[ENA]
¡û
>W1910181177
BJLS01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
178
93
-
Leu
AAG
[ENA]
¡û
>C141000470
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
192044
191957
-
Leu
AAG
[Ensembl]
¡û
>W1910810809
MUXD01000006
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
22779
22864
+
Leu
AAG
[ENA]
¡û
>W1910870951
NCWT01000004
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
43199
43284
+
Leu
AAG
[ENA]
¡û
>W1911495488
OBMW01000031
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
29462
29376
-
Leu
AAG
[ENA]
¡û
>W1911533379
OKQR01000005
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
44206
44119
-
Leu
AAG
[ENA]
¡û
>W1911533529
OKQU01000004
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
44206
44119
-
Leu
AAG
[ENA]
¡û
>W1911533594
OKQW01000001
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
804922
805007
+
Leu
AAG
[ENA]
¡û
>W1911533951
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
44163
44078
-
Leu
AAG
[ENA]
¡û
>W1911538521
OMON01000005
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
44206
44119
-
Leu
AAG
[ENA]
¡û
>W1911539183
OMPP01000001
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
44163
44078
-
Leu
AAG
[ENA]
¡û
>W1911540021
ONZM01000028
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
1555
1641
+
Leu
AAG
[ENA]
¡û
>W1911541764
OOIO01000019
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
1555
1641
+
Leu
AAG
[ENA]
¡û
>W1810705433
QMJH01000011
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
57669
57754
+
Leu
AAG
[ENA]
¡û
>W1810705480
QMJI01000011
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
57579
57664
+
Leu
AAG
[ENA]
¡û
>W1810705568
QMJK01000014
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
57670
57755
+
Leu
AAG
[ENA]
¡û
>C151089418
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
892658
892571
-
Leu
AAG
[Ensembl]
¡û
>W1510013874
BBPK01000009
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
121359
121446
+
Leu
AAG
[ENA]
¡û
>C10108489
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
1324019
1324105
+
Leu
AAG
[Ensembl]
¡û
>WENV11100330
AEKF01000078
Food metagenome, Jonggazip commercial cabbage kimchi
8909
8822
-
Leu
AAG
[ENA]
¡û
>C11112666
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
1101127
1101041
-
Leu
AAG
[Ensembl]
¡û
>C11112843
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1719307
1719221
-
Leu
AAG
[Ensembl]
¡û
>W11140924
AEMI01000006
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
1428
1514
+
Leu
AAG
[ENA]
¡û
>W11140966
AEMJ01000076
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
1438
1524
+
Leu
AAG
[ENA]
¡û
>W1511585371
LAYN01000001
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
217384
217471
+
Leu
AAG
[ENA]
¡û
>W1511585733
LAYU01000010
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
274
187
-
Leu
AAG
[ENA]
¡û
>W1511585770
LAYV01000006
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
41553
41640
+
Leu
AAG
[ENA]
¡û
>C121005828
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
192235
192148
-
Leu
AAG
[Ensembl]
¡û
>C161074426
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
192066
191979
-
Leu
AAG
-
¡û
>C161107416
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1759643
1759557
-
Leu
AAG
[Ensembl]
¡û
>W1610061389
BCMO01000010
Bacillota
Leuconostoc mesenteroides [BCMO]
391
304
-
Leu
AAG
[ENA]
¡û
>W1610061429
BCMP01000019
Bacillota
Leuconostoc mesenteroides [BCMP]
22239
22326
+
Leu
AAG
[ENA]
¡û
>W1610187651
FBSX01000002
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
29431
29345
-
Leu
AAG
[ENA]
¡û
>W1610187731
FBSY01000019
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
29606
29520
-
Leu
AAG
[ENA]
¡û
>W1610187748
FBTB01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
75033
75119
+
Leu
AAG
[ENA]
¡û
>W1610187813
FBTC01000027
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
29616
29530
-
Leu
AAG
[ENA]
¡û
>W1610187835
FBTD01000010
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
500
414
-
Leu
AAG
[ENA]
¡û
>W1610187889
FBTU01000023
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
29430
29344
-
Leu
AAG
[ENA]
¡û
>C131007838
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1682968
1682882
-
Leu
AAG
[Ensembl]
¡û
>C131008305
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
218800
218886
+
Leu
AAG
[Ensembl]
¡û
>W1710059054
BCMO01000010
Bacillota
Leuconostoc mesenteroides [BCMO]
391
304
-
Leu
AAG
[ENA]
¡û
>W1710059094
BCMP01000019
Bacillota
Leuconostoc mesenteroides [BCMP]
22239
22326
+
Leu
AAG
[ENA]
¡û
>W1710189267
FBSX01000002
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
29431
29345
-
Leu
AAG
[ENA]
¡û
>W1710189347
FBSY01000019
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
29606
29520
-
Leu
AAG
[ENA]
¡û
>W1710189364
FBTB01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
75033
75119
+
Leu
AAG
[ENA]
¡û
>W1710189429
FBTC01000027
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
29616
29530
-
Leu
AAG
[ENA]
¡û
>W1710189451
FBTD01000010
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
500
414
-
Leu
AAG
[ENA]
¡û
>W1710189505
FBTU01000023
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
29430
29344
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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