This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56123 (55 seq.)
>W1710860320
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
318197
318284
+
Ser
GGA
[ENA]
¡û
>W1710861317
LMDN01000002
Actinomycetota
Leifsonia sp. Root4 [LMDN]
501194
501281
+
Ser
GGA
[ENA]
¡û
>W1710876791
LMPO01000001
Actinomycetota
Curtobacterium sp. Leaf183 [LMPO]
135791
135876
+
Ser
GGA
[ENA]
¡û
>W1710921179
LNZG01000034
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
90357
90270
-
Ser
GGA
[ENA]
¡û
>W1711460891
MJGI01000007
Actinomycetota
Curtobacterium sp. MCBA15_001 [MJGI]
156796
156883
+
Ser
GGA
[ENA]
¡û
>W1711461174
MJGO01000039
Actinomycetota
Curtobacterium sp. MCBA15_009 [MJGO]
255724
255811
+
Ser
GGA
[ENA]
¡û
>W1711461227
MJGP01000028
Actinomycetota
Curtobacterium sp. MCBA15_012 [MJGP]
81475
81562
+
Ser
GGA
[ENA]
¡û
>W1711505301
MKVJ01000019
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
138909
138996
+
Ser
GGA
[ENA]
¡û
>C171036934
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
249136
249051
-
Ser
GGA
-
¡û
>W131216948
ATWH01000009
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
180441
180528
+
Ser
GGA
[ENA]
¡û
>C012843
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
334606
334519
-
Ser
GGA
[Ensembl]
¡û
>WENV180016693
FSVT01000674
[FSVT] metagenome; soil
1026
1112
+
Ser
GGA
[ENA]
¢þ
>WENV180103013
OAPA01000093
[OAPA] marine metagenome; ENVO:00002010
691
778
+
Ser
GGA
[ENA]
¢þ
>WENV180209070
OBAK01012817
[OBAK] marine metagenome; ENVO.00002150
341
254
-
Ser
GGA
[ENA]
¢þ
>WENV180212231
OBAN01000900
[OBAN] marine metagenome; ENVO 00002150
1083
1170
+
Ser
GGA
[ENA]
¢þ
>WENV180359630
OBNS01007357
[OBNS] marine metagenome; Seawater
305
392
+
Ser
GGA
[ENA]
¢þ
>WENV180361716
OBNW01000094
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
3177
3090
-
Ser
GGA
[ENA]
¢þ
>WENV180364946
OBOB01000217
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1773
1686
-
Ser
GGA
[ENA]
¢þ
>WENV180368487
OBOF01108788
[OBOF] marine metagenome; ENVO:00002010
128
215
+
Ser
GGA
[ENA]
¢þ
>WENV180369815
OBOH01003867
[OBOH] marine metagenome; ENVO:00002010
641
728
+
Ser
GGA
[ENA]
¢þ
>WENV180591475
OCOV01026384
[OCOV] marine metagenome; ENVO:01000301
216
303
+
Ser
GGA
[ENA]
¢þ
>WENV181324495
OFLF01000024
[OFLF] marine metagenome; melt pond
9215
9302
+
Ser
GGA
[ENA]
¢þ
>WENV181391595
OFRT01025754
[OFRT] seawater metagenome; seawater
323
236
-
Ser
GGA
[ENA]
¢þ
>WENV183625585
OOGG01001635
[OOGG] marine metagenome; sea ice
292
379
+
Ser
GGA
[ENA]
¢þ
>WENV183629300
OOGP01018362
[OOGP] marine metagenome; seawater
257
170
-
Ser
GGA
[ENA]
¢þ
>WENV170568452
FLMP01041035
[FLMP] seawater metagenome; seawater
648
735
+
Ser
GGA
[ENA]
¢þ
>C181143977
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
2173459
2173546
+
Ser
GGA
-
¡û
>W141702215
JMLI01000014
Actinomycetota
Curtobacterium sp. UNCCL17 [JMLI]
411993
411908
-
Ser
GGA
[ENA]
¡û
>W1911631235
PUEZ01000003
Actinomycetota
Curtobacterium flaccumfaciens pv. flaccumfaciens CFBP3418 [PUEZ]
687442
687357
-
Ser
GGA
[ENA]
¡û
>W1911685084
QKSE01000012
Actinomycetota
Curtobacterium sp. MCPF17_051 [QKSE]
93882
93797
-
Ser
GGA
[ENA]
¡û
>W1911685266
QKSI01000013
Actinomycetota
Curtobacterium sp. MCPF17_002 [QKSI]
92154
92067
-
Ser
GGA
[ENA]
¡û
>W1911685783
QKTR01000005
Actinomycetota
Curtobacterium sp. MCBD17_026 [QKTR]
93997
93912
-
Ser
GGA
[ENA]
¡û
>W1810364725
PVTL01000009
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
87518
87604
+
Ser
GGA
[ENA]
¡û
>W1810568832
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
1174668
1174755
+
Ser
GGA
[ENA]
¡û
>W1810675470
QKLE01000009
Actinomycetota
Curtobacterium sp. MCSS17_011 [QKLE]
54013
54098
+
Ser
GGA
[ENA]
¡û
>W1810681246
QKSS01000003
Actinomycetota
Curtobacterium sp. MCJR17_020 [QKSS]
52676
52763
+
Ser
GGA
[ENA]
¡û
>W1810681304
QKST01000005
Actinomycetota
Curtobacterium sp. MCLR17_007 [QKST]
11689
11604
-
Ser
GGA
[ENA]
¡û
>W1810681346
QKSU01000003
Actinomycetota
Curtobacterium sp. MCLR17_059 [QKSU]
169607
169522
-
Ser
GGA
[ENA]
¡û
>W1810681428
QKSW01000003
Actinomycetota
Curtobacterium sp. MCLR17_057 [QKSW]
13488
13403
-
Ser
GGA
[ENA]
¡û
>W1810681487
QKSX01000007
Actinomycetota
Curtobacterium sp. MCLR17_055 [QKSX]
53539
53454
-
Ser
GGA
[ENA]
¡û
>W1810681831
QKTE01000022
Actinomycetota
Curtobacterium sp. MCLR17_040 [QKTE]
54334
54419
+
Ser
GGA
[ENA]
¡û
>W1810681936
QKTH01000003
Actinomycetota
Curtobacterium sp. MCLR17_034 [QKTH]
135592
135677
+
Ser
GGA
[ENA]
¡û
>W1810684463
QKXI01000009
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
180606
180519
-
Ser
GGA
[ENA]
¡û
>W1810762693
QQAO01000003
Actinomycetota
Curtobacterium sp. AG1037 [QQAO]
178195
178282
+
Ser
GGA
[ENA]
¡û
>C151025299
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
316495
316408
-
Ser
GGA
[Ensembl]
¡û
>W1511691442
LFYU01001588
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
231
144
-
Ser
GGA
[ENA]
¡û
>C161067239
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
2579828
2579915
+
Ser
GGA
[Ensembl]
¡û
>W121043564
AHWA01000005
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
465278
465193
-
Ser
GGA
[ENA]
¡û
>W1610069754
BCST01000002
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
233761
233848
+
Ser
GGA
[ENA]
¡û
>W1610722666
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
318197
318284
+
Ser
GGA
[ENA]
¡û
>W1610723663
LMDN01000002
Actinomycetota
Leifsonia sp. Root4 [LMDN]
501194
501281
+
Ser
GGA
[ENA]
¡û
>W1610739137
LMPO01000001
Actinomycetota
Curtobacterium sp. Leaf183 [LMPO]
135791
135876
+
Ser
GGA
[ENA]
¡û
>W1710067127
BCST01000002
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
233761
233848
+
Ser
GGA
[ENA]
¡û
>W1710540808
FNXD01000013
Actinomycetota
Leifsonia sp. CL154 [FNXD]
30672
30585
-
Ser
GGA
[ENA]
¡û
>W1710575411
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
1437972
1437885
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK