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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56154 (62 seq.)
>W1710944376
LOQS01000015
Actinomycetota
Corynebacterium glutamicum [LOQS]
173198
173111
-
Ser
GGA
[ENA]
¡û
>W1710944429
LOQT01000014
Actinomycetota
Corynebacterium glutamicum [LOQT]
104507
104594
+
Ser
GGA
[ENA]
¡û
>W1710944518
LOQV01000022
Actinomycetota
Corynebacterium glutamicum [LOQV]
250365
250452
+
Ser
GGA
[ENA]
¡û
>W1710944565
LOQW01000016
Actinomycetota
Corynebacterium glutamicum [LOQW]
104507
104594
+
Ser
GGA
[ENA]
¡û
>W1710944655
LOQX01000056
Actinomycetota
Corynebacterium glutamicum [LOQX]
151894
151981
+
Ser
GGA
[ENA]
¡û
>W1710944683
LOQY01000076
Actinomycetota
Corynebacterium glutamicum [LOQY]
475
388
-
Ser
GGA
[ENA]
¡û
>C171074441
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
296574
296487
-
Ser
GGA
-
¡û
>C171111092
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
2479420
2479507
+
Ser
GGA
-
¡û
>W131156387
AQPS01000016
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
56120
56033
-
Ser
GGA
[ENA]
¡û
>W131204417
ATBY01000017
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
472466
472381
-
Ser
GGA
[ENA]
¡û
>W131215705
ATVF01000008
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
108775
108862
+
Ser
GGA
[ENA]
¡û
>C005574
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
219915
219828
-
Ser
GGA
[Ensembl]
¡û
>C005714
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
256309
256222
-
Ser
GGA
[Ensembl]
¡û
>C005774
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
256310
256223
-
Ser
GGA
[Ensembl]
¡û
>C005832
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
340265
340178
-
Ser
GGA
[Ensembl]
¡û
>W141026573
AKXP01000007
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
56120
56033
-
Ser
GGA
[ENA]
¡û
>WENV180697603
ODDE01001695
[ODDE] human metagenome; G_DNA_Supragingival plaque
3511
3596
+
Ser
GGA
[ENA]
¢þ
>WENV180722023
ODGL01054622
[ODGL] human metagenome; G_DNA_Subgingival plaque
217
132
-
Ser
GGA
[ENA]
¢þ
>WENV180734026
ODGZ01002016
[ODGZ] human metagenome; G_DNA_Supragingival plaque
153
68
-
Ser
GGA
[ENA]
¢þ
>WENV180773501
ODIJ01000391
[ODIJ] human metagenome; G_DNA_Tongue dorsum
21022
21109
+
Ser
GGA
[ENA]
¢þ
>WENV180975982
ODUY01035787
[ODUY] human metagenome; G_DNA_Supragingival plaque
273
188
-
Ser
GGA
[ENA]
¢þ
>WENV180987481
ODVK01028446
[ODVK] human metagenome; G_DNA_Supragingival plaque
789
874
+
Ser
GGA
[ENA]
¢þ
>WENV181067258
ODZI01010686
[ODZI] human metagenome; G_DNA_Supragingival plaque
125
40
-
Ser
GGA
[ENA]
¢þ
>WENV181090923
OEBC01006453
[OEBC] human metagenome; G_DNA_Supragingival plaque
3647
3732
+
Ser
GGA
[ENA]
¢þ
>WENV181158892
OEIH01015029
[OEIH] human metagenome; G_DNA_Supragingival plaque
529
444
-
Ser
GGA
[ENA]
¢þ
>WENV181180877
OEJU01001583
[OEJU] human metagenome; G_DNA_Supragingival plaque
112
27
-
Ser
GGA
[ENA]
¢þ
>C181001641
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
385474
385389
-
Ser
GGA
-
¡û
>C181002255
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
296907
296822
-
Ser
GGA
-
¡û
>C181029663
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
254650
254565
-
Ser
GGA
-
¡û
>C181064182
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
3143856
3143771
-
Ser
GGA
-
¡û
>C181070006
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
286275
286190
-
Ser
GGA
-
¡û
>C181118464
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
258041
257956
-
Ser
GGA
-
¡û
>C181118513
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
1037462
1037377
-
Ser
GGA
-
¡û
>W09127918
ACLI01000105
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
43093
43180
+
Ser
GGA
[ENA]
¡û
>W141800916
JPDH01000171
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
13101
13014
-
Ser
GGA
[ENA]
¡û
>W1910001223
APJJ01000002
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
80038
79953
-
Ser
GGA
[ENA]
¡û
>W1910374186
FUIB01000016
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
139665
139580
-
Ser
GGA
[ENA]
¡û
>C141004179
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
256287
256200
-
Ser
GGA
[Ensembl]
¡û
>W1910438301
FWCI01000013
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
65315
65230
-
Ser
GGA
[ENA]
¡û
>W1910573001
JOLA01000002
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
445
360
-
Ser
GGA
[ENA]
¡û
>C151033034
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
284298
284211
-
Ser
GGA
[Ensembl]
¡û
>C151033091
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
284304
284217
-
Ser
GGA
[Ensembl]
¡û
>C151045713
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
268823
268736
-
Ser
GGA
-
¡û
>C151069930
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
262886
262799
-
Ser
GGA
[Ensembl]
¡û
>C151079641
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
286278
286191
-
Ser
GGA
[Ensembl]
¡û
>W1511500669
JXBH01000003
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
88105
88018
-
Ser
GGA
[ENA]
¡û
>W1511524445
JYEG01000004
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
100087
100174
+
Ser
GGA
[ENA]
¡û
>W1511542081
JZFA01000020
Actinomycetota
Corynebacterium argentoratense CNM 601/08 [JZFA]
19143
19230
+
Ser
GGA
[ENA]
¡û
>W11176881
AFYA01000008
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
13088
13001
-
Ser
GGA
[ENA]
¡û
>C161003077
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
296590
296503
-
Ser
GGA
-
¡û
>C161003136
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
296617
296530
-
Ser
GGA
-
¡û
>C161040480
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
296591
296504
-
Ser
GGA
-
¡û
>C161063690
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
315258
315171
-
Ser
GGA
[Ensembl]
¡û
>C161081169
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
284668
284581
-
Ser
GGA
-
¡û
>C161089909
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
259292
259205
-
Ser
GGA
[Ensembl]
¡û
>C161096108
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
295291
295204
-
Ser
GGA
-
¡û
>W121016289
AGQQ01000036
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
151841
151928
+
Ser
GGA
[ENA]
¡û
>C131012062
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
325658
325571
-
Ser
GGA
[Ensembl]
¡û
>C131012122
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
325659
325572
-
Ser
GGA
[Ensembl]
¡û
>C131013511
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
231101
231014
-
Ser
GGA
[Ensembl]
¡û
>C131019787
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
256309
256222
-
Ser
GGA
[Ensembl]
¡û
>W1710039850
BAYH01000008
Actinomycetota
Corynebacterium glutamicum [BAYH]
61061
60974
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK