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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56310 (101 seq.)
>W1710862349
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
955217
955132
-
Ser
GGA
[ENA]
¡û
>W1710865475
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
955354
955269
-
Ser
GGA
[ENA]
¡û
>W1710867770
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
685620
685533
-
Ser
GGA
[ENA]
¡û
>W1710873334
LMMR01000009
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
132473
132558
+
Ser
GGA
[ENA]
¡û
>W1710875487
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
170693
170778
+
Ser
GGA
[ENA]
¡û
>W1710876174
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
145838
145925
+
Ser
GGA
[ENA]
¡û
>W1711173299
LWCT01000010
Actinomycetota
Plantibacter sp. H53 [LWCT]
7981
8068
+
Ser
GGA
[ENA]
¡û
>W1711386899
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
1174457
1174370
-
Ser
GGA
[ENA]
¡û
>W1711461087
MJGM01000034
Actinomycetota
Curtobacterium sp. MCBA15_007 [MJGM]
68682
68767
+
Ser
GGA
[ENA]
¡û
>W1711461393
MJGT01000051
Actinomycetota
Curtobacterium sp. MMLR14_002 [MJGT]
52611
52696
+
Ser
GGA
[ENA]
¡û
>W1711461563
MJGX01000049
Actinomycetota
Curtobacterium sp. MMLR14_014 [MJGX]
14709
14624
-
Ser
GGA
[ENA]
¡û
>W1711505554
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
1767420
1767333
-
Ser
GGA
[ENA]
¡û
>C171111590
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
2932604
2932691
+
Ser
GGA
-
¡û
>C171127465
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
452393
452306
-
Ser
GGA
-
¡û
>w013977
AAOB01000010
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
2705
2618
-
Ser
GGA
[ENA]
¡û
>WENV180016056
FSTY01000445
[FSTY] metagenome; soil
1969
2056
+
Ser
GGA
[ENA]
¢þ
>WENV180017003
FSWJ01000398
[FSWJ] metagenome; soil
30028
29943
-
Ser
GGA
[ENA]
¢þ
>WENV180017284
FSWR01000057
[FSWR] metagenome; soil
77165
77250
+
Ser
GGA
[ENA]
¢þ
>WENV180018344
FSYX01000112
[FSYX] metagenome; soil
2028
2115
+
Ser
GGA
[ENA]
¢þ
>WENV180018362
FSYX01000386
[FSYX] metagenome; soil
1959
1874
-
Ser
GGA
[ENA]
¢þ
>WENV180023796
FTIF01000430
[FTIF] metagenome; soil
894
979
+
Ser
GGA
[ENA]
¢þ
>WENV180024223
FTIF01323654
[FTIF] metagenome; soil
12179
12264
+
Ser
GGA
[ENA]
¢þ
>WENV180029101
FTJI01036417
[FTJI] metagenome; soil
3466
3379
-
Ser
GGA
[ENA]
¢þ
>WENV180030815
FTJN01096701
[FTJN] metagenome; soil
1751
1664
-
Ser
GGA
[ENA]
¢þ
>WENV180034625
FTKR01036951
[FTKR] metagenome; soil
3466
3379
-
Ser
GGA
[ENA]
¢þ
>WENV180110637
OAPN01001844
[OAPN] marine metagenome; 2011
820
905
+
Ser
GGA
[ENA]
¢þ
>WENV180209569
OBAL01004385
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1244
1331
+
Ser
GGA
[ENA]
¢þ
>WENV180393842
OBPR01014300
[OBPR] marine metagenome; ENVO:00002042
391
478
+
Ser
GGA
[ENA]
¢þ
>WENV180393984
OBPR01032757
[OBPR] marine metagenome; ENVO:00002042
345
258
-
Ser
GGA
[ENA]
¢þ
>WENV180394456
OBPS01007054
[OBPS] marine metagenome; ENVO:00002010 seawater
285
198
-
Ser
GGA
[ENA]
¢þ
>WENV180395194
OBPT01003593
[OBPT] marine metagenome; ENVO:00002010 seawater
1128
1041
-
Ser
GGA
[ENA]
¢þ
>WENV181126204
OEFV01019013
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
460
545
+
Ser
GGA
[ENA]
¢þ
>WENV181167591
OEIU01046886
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
142
55
-
Ser
GGA
[ENA]
¢þ
>WENV181222656
OFDC01000053
[OFDC] hot springs metagenome; Water
31595
31682
+
Ser
GGA
[ENA]
¢þ
>WENV181323703
OFKZ01000156
[OFKZ] marine metagenome; sea ice
865
778
-
Ser
GGA
[ENA]
¢þ
>WENV181369683
OFQP01021454
[OFQP] freshwater metagenome; Freshwater Lake
392
479
+
Ser
GGA
[ENA]
¢þ
>WENV181385243
OFRI01052837
[OFRI] wastewater metagenome; Exp Tend VB 90WW
364
449
+
Ser
GGA
[ENA]
¢þ
>W141146497
AWVQ01000128
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
3494
3581
+
Ser
GGA
[ENA]
¡û
>WENV183734948
PJUA01000215
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
43625
43711
+
Ser
GGA
[ENA]
¢þ
>WENV170010688
APMI01025343
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
177
262
+
Ser
GGA
[ENA]
¢þ
>WENV170312702
CESM01391142
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
517
430
-
Ser
GGA
[ENA]
¢þ
>WENV170570738
FLOH01000020
[FLOH] marine metagenome; water
472001
472088
+
Ser
GGA
[ENA]
¢þ
>WENV170602797
FUWD010264156
[FUWD] metagenome; unknown
154
241
+
Ser
GGA
[ENA]
¢þ
>WENV170713174
LNFM01025534
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4689
4774
+
Ser
GGA
[ENA]
¢þ
>WENV170784334
MCHG01000862
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
4898
4985
+
Ser
GGA
[ENA]
¢þ
>WENV170824499
MDSY01077183
[MDSY] marine metagenome; seawater
16223
16308
+
Ser
GGA
[ENA]
¢þ
>WENV170924328
MDTG01064210
[MDTG] marine metagenome; seawater
3431
3344
-
Ser
GGA
[ENA]
¢þ
>C181196617
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
1456884
1456797
-
Ser
GGA
-
¡û
>C191071501
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
1989467
1989554
+
Ser
GGA
-
¡û
>C191092366
CP032624
Actinomycetota
Gryllotalpicola protaetiae 2DFW10M-5 [CP032624]
2417118
2417033
-
Ser
GGA
-
¡û
>C191101005
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
4004840
4004927
+
Ser
GGA
-
¡û
>WENV022866
AACY020680383
Marine microbial communities from Global Ocean Sampling (GOS)
808
721
-
Ser
GGA
[ENA]
>W1910785503
MQTR01000088
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
1704
1791
+
Ser
GGA
[ENA]
¡û
>W1910857526
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
650593
650506
-
Ser
GGA
[ENA]
¡û
>W1910857535
NBXA01000006
Actinomycetota
Subtercola boreus P27444 [NBXA]
91693
91606
-
Ser
GGA
[ENA]
¡û
>W1910857585
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
40805
40718
-
Ser
GGA
[ENA]
¡û
>W1810168621
PJJJ01000034
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
197428
197341
-
Ser
GGA
[ENA]
¡û
>W1810168642
PJJK01000080
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
15575
15490
-
Ser
GGA
[ENA]
¡û
>W1810168699
PJJL01000068
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
36393
36480
+
Ser
GGA
[ENA]
¡û
>W1810168759
PJJM01000100
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
60296
60381
+
Ser
GGA
[ENA]
¡û
>W1810168789
PJJN01000033
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
31959
32046
+
Ser
GGA
[ENA]
¡û
>W1810168842
PJJO01000058
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
219588
219501
-
Ser
GGA
[ENA]
¡û
>W1810168856
PJJP01000014
Actinomycetota
Cryobacterium sp. N22 [PJJP]
11499
11412
-
Ser
GGA
[ENA]
¡û
>W1810168937
PJJQ01000035
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
339364
339451
+
Ser
GGA
[ENA]
¡û
>W1810168962
PJJR01000049
Actinomycetota
Cryobacterium sp. N19 [PJJR]
179094
179007
-
Ser
GGA
[ENA]
¡û
>W1810168995
PJJS01000036
Actinomycetota
Cryobacterium sp. M96 [PJJS]
63109
63196
+
Ser
GGA
[ENA]
¡û
>W1810169041
PJJT01000074
Actinomycetota
Cryobacterium sp. M91 [PJJT]
40980
40893
-
Ser
GGA
[ENA]
¡û
>W1810169079
PJJU01000012
Actinomycetota
Cryobacterium sp. M25 [PJJU]
6709
6796
+
Ser
GGA
[ENA]
¡û
>W1810169126
PJJV01000028
Actinomycetota
Cryobacterium sp. M23 [PJJV]
8033
8120
+
Ser
GGA
[ENA]
¡û
>W1810169179
PJJW01000030
Actinomycetota
Cryobacterium sp. M15 [PJJW]
36130
36217
+
Ser
GGA
[ENA]
¡û
>W1810240359
PPTG01000005
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
65712
65799
+
Ser
GGA
[ENA]
¡û
>W1810242585
PPXD01000006
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
95628
95541
-
Ser
GGA
[ENA]
¡û
>W1810242664
PPXE01000029
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
28121
28208
+
Ser
GGA
[ENA]
¡û
>W1810242716
PPXF01000076
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
24158
24245
+
Ser
GGA
[ENA]
¡û
>W1810277720
PSUB01000024
Actinomycetota
Rathayibacter sp. AY2B9 [PSUB]
13448
13363
-
Ser
GGA
[ENA]
¡û
>W1810277885
PSUF01000032
Actinomycetota
Rathayibacter rathayi AY2B4 [PSUF]
7171
7256
+
Ser
GGA
[ENA]
¡û
>W1810279393
PSVO01000037
Actinomycetota
Rathayibacter sp. AY1E2 [PSVO]
2979
2894
-
Ser
GGA
[ENA]
¡û
>W1810279502
PSVR01000012
Actinomycetota
Rathayibacter rathayi AY1D8 [PSVR]
64234
64319
+
Ser
GGA
[ENA]
¡û
>W1810279562
PSVS01000107
Actinomycetota
Rathayibacter sp. AY1D7 [PSVS]
1570
1485
-
Ser
GGA
[ENA]
¡û
>W1810280342
PSWK01000045
Actinomycetota
Rathayibacter sp. AY1B7 [PSWK]
2957
2872
-
Ser
GGA
[ENA]
¡û
>W1810280503
PSWO01000026
Actinomycetota
Rathayibacter sp. AY1B1 [PSWO]
10290
10375
+
Ser
GGA
[ENA]
¡û
>W1810281700
PSXP01000039
Actinomycetota
Rathayibacter rathayi Z015 [PSXP]
7295
7380
+
Ser
GGA
[ENA]
¡û
>W1810281925
PSXU01000087
Actinomycetota
Rathayibacter iranicus FH154 [PSXU]
15390
15305
-
Ser
GGA
[ENA]
¡û
>W1810627263
QHLY01000010
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
21881
21968
+
Ser
GGA
[ENA]
¡û
>W1511317447
JPXF01000163
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
3367
3454
+
Ser
GGA
[ENA]
¡û
>C161095713
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
479091
479004
-
Ser
GGA
[Ensembl]
¡û
>W1610625686
LIAY01000128
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
3177
3264
+
Ser
GGA
[ENA]
¡û
>W1610724695
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
955217
955132
-
Ser
GGA
[ENA]
¡û
>W1610727821
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
955354
955269
-
Ser
GGA
[ENA]
¡û
>W1610730116
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
685620
685533
-
Ser
GGA
[ENA]
¡û
>W1610735680
LMMR01000009
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
132473
132558
+
Ser
GGA
[ENA]
¡û
>W1610737833
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
170693
170778
+
Ser
GGA
[ENA]
¡û
>W1610738520
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
145838
145925
+
Ser
GGA
[ENA]
¡û
>W1610981904
LWCT01000010
Actinomycetota
Plantibacter sp. H53 [LWCT]
7981
8068
+
Ser
GGA
[ENA]
¡û
>WENV078450
AAGA01015863
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
271
184
-
Ser
GGA
[ENA]
>W1710520671
FNFU01000016
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
18882
18969
+
Ser
GGA
[ENA]
¡û
>W1710523536
FNIB01000005
Actinomycetota
Cryobacterium flavum [FNIB]
128625
128712
+
Ser
GGA
[ENA]
¡û
>W1710546897
FOCN01000001
Actinomycetota
Cryobacterium luteum [FOCN]
49882
49969
+
Ser
GGA
[ENA]
¡û
>W1710563663
FOPW01000002
Actinomycetota
Cryobacterium levicorallinum [FOPW]
57957
58044
+
Ser
GGA
[ENA]
¡û
>W1710608084
FXAP01000004
Actinomycetota
Plantibacter flavus [FXAP]
312238
312325
+
Ser
GGA
[ENA]
¡û
>W1710756813
LIAY01000128
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
3177
3264
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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