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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56374 (38 seq.)
>W1710810802
LKHV01000001
Gammaproteobacteria
Candidatus Berkiella cookevillensis CC99 [LKHV]
516448
516361
-
Ser
TGA
[ENA]
¡û
>W1710919570
LNXT01000006
Gammaproteobacteria
Legionella birminghamensis [LNXT]
35284
35197
-
Ser
TGA
[ENA]
¡û
>W1710919650
LNXV01000004
Gammaproteobacteria
Legionella brunensis [LNXV]
93265
93178
-
Ser
TGA
[ENA]
¡û
>W1710919773
LNXY01000003
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
291289
291376
+
Ser
TGA
[ENA]
¡û
>W1710920055
LNYF01000004
Gammaproteobacteria
Legionella hackeliae [LNYF]
82187
82100
-
Ser
TGA
[ENA]
¡û
>W1710920105
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
243937
244024
+
Ser
TGA
[ENA]
¡û
>W1710920155
LNYH01000100
Gammaproteobacteria
Legionella israelensis [LNYH]
46339
46426
+
Ser
TGA
[ENA]
¡û
>W1710920430
LNYO01000013
Gammaproteobacteria
Legionella nautarum [LNYO]
427050
426963
-
Ser
TGA
[ENA]
¡û
>W1710920573
LNYS01000006
Gammaproteobacteria
Legionella quinlivanii [LNYS]
314917
315004
+
Ser
TGA
[ENA]
¡û
>W1711252412
LYOZ01000037
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
16286
16373
+
Ser
TGA
[ENA]
¡û
>C171110861
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
1838260
1838347
+
Ser
TGA
-
¡û
>W131230558
AUHS01000007
Gammaproteobacteria
Legionella moravica DSM 19234 [AUHS]
42042
41955
-
Ser
TGA
[ENA]
¡û
>WENV180101894
OAOW01049106
[OAOW] marine metagenome; ENVO.00002110
205
291
+
Ser
TGA
[ENA]
¢þ
>W141273142
CCSB01000004
Gammaproteobacteria
Legionella massiliensis [CCSB]
333355
333268
-
Ser
TGA
[ENA]
¡û
>W141273900
CCVW01000004
Gammaproteobacteria
Legionella massiliensis [CCVW]
333355
333268
-
Ser
TGA
[ENA]
¡û
>WENV170259592
CEQY01194857
[CEQY] marine metagenome genome assembly TARA_070_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1768
1681
-
Ser
TGA
[ENA]
¢þ
>C181019714
CP016397
Gammaproteobacteria
Legionella clemsonensis CDC-D5610 [CP016397]
1801328
1801413
+
Ser
TGA
-
¡û
>C181224597
LT906442
Gammaproteobacteria
Legionella waltersii NCTC13017 [LT906442]
1474248
1474161
-
Ser
TGA
-
¡û
>C191158540
CP038254
Gammaproteobacteria
Legionella israelensis HL-0427-4011 [CP038254]
1329845
1329758
-
Ser
TGA
-
¡û
>C191159118
CP038273
Gammaproteobacteria
Legionella israelensis Bercovier 4 [CP038273]
2998091
2998004
-
Ser
TGA
-
¡û
>W141561018
JHYC01000005
Gammaproteobacteria
Legionella fairfieldensis ATCC 49588 [JHYC]
115121
115208
+
Ser
TGA
[ENA]
¡û
>W1910814185
MVJN01000006
Gammaproteobacteria
Legionella quinlivanii ID143958 [MVJN]
213891
213978
+
Ser
TGA
[ENA]
¡û
>C151103418
LN614827
Gammaproteobacteria
Legionella fallonii LLAP-10 [LN614827]
1255508
1255421
-
Ser
TGA
[Ensembl]
¡û
>C151103884
LN681225
Gammaproteobacteria
Legionella hackeliae ATCC 35250 [LN681225]
1425752
1425665
-
Ser
TGA
[Ensembl]
¡û
>W1610674857
LKHV01000001
Gammaproteobacteria
Candidatus Berkiella cookevillensis CC99 [LKHV]
516448
516361
-
Ser
TGA
[ENA]
¡û
>W1610777468
LNXT01000006
Gammaproteobacteria
Legionella birminghamensis [LNXT]
35284
35197
-
Ser
TGA
[ENA]
¡û
>W1610777548
LNXV01000004
Gammaproteobacteria
Legionella brunensis [LNXV]
93265
93178
-
Ser
TGA
[ENA]
¡û
>W1610777671
LNXY01000003
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
291289
291376
+
Ser
TGA
[ENA]
¡û
>W1610777953
LNYF01000004
Gammaproteobacteria
Legionella hackeliae [LNYF]
82187
82100
-
Ser
TGA
[ENA]
¡û
>W1610778003
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
243937
244024
+
Ser
TGA
[ENA]
¡û
>W1610778053
LNYH01000100
Gammaproteobacteria
Legionella israelensis [LNYH]
46339
46426
+
Ser
TGA
[ENA]
¡û
>W1610778328
LNYO01000013
Gammaproteobacteria
Legionella nautarum [LNYO]
427050
426963
-
Ser
TGA
[ENA]
¡û
>W1610778471
LNYS01000006
Gammaproteobacteria
Legionella quinlivanii [LNYS]
314917
315004
+
Ser
TGA
[ENA]
¡û
>W1611017200
LYOZ01000037
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
16286
16373
+
Ser
TGA
[ENA]
¡û
>W1710507452
FMVH01000006
Gammaproteobacteria
Legionella israelensis DSM 19235 [FMVH]
27971
27884
-
Ser
TGA
[ENA]
¡û
>W1710507767
FMVN01000006
Gammaproteobacteria
Legionella micdadei [FMVN]
195999
196086
+
Ser
TGA
[ENA]
¡û
>W1710539366
FNVH01000002
Gammaproteobacteria
Legionella quinlivanii DSM 21216 [FNVH]
203198
203285
+
Ser
TGA
[ENA]
¡û
>W1710568966
FOTZ01000005
Gammaproteobacteria
Legionella jamestowniensis DSM 19215 [FOTZ]
300208
300121
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK