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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56409 (119 seq.)
>A171000789
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
1992647
1992563
-
Leu
GAG
-
¡û
>A171001133
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2727554
2727638
+
Leu
GAG
-
¡û
>A171001295
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
1182421
1182505
+
Leu
GAG
-
¡û
>A171002460
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
3486022
3486106
+
Leu
GAG
-
¡û
>A171002641
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1440915
1440831
-
Leu
GAG
-
¡û
>A171002708
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
2322174
2322258
+
Leu
GAG
-
¡û
>A171003076
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1109140
1109056
-
Leu
GAG
-
¡û
>A171003111
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
2127545
2127461
-
Leu
GAG
-
¡û
>A171003162
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1409715
1409799
+
Leu
GAG
-
¡û
>A171003473
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1276057
1276141
+
Leu
GAG
-
¡û
>A171003974
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1452348
1452264
-
Leu
GAG
-
¡û
>A171005810
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
3095663
3095579
-
Leu
GAG
-
¡û
>A171006936
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2096286
2096202
-
Leu
GAG
-
¡û
>A171006964
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1756100
1756184
+
Leu
GAG
-
¡û
>A171007021
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
910654
910570
-
Leu
GAG
-
¡û
>A171007242
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
2756823
2756908
+
Leu
GAG
-
¡û
>WENV180318538
OBKM01001636
[OBKM] metagenome; water
5310
5394
+
Leu
GAG
[ENA]
¢þ
>WENV180318545
OBKM01001690
[OBKM] metagenome; water
8401
8485
+
Leu
GAG
[ENA]
¢þ
>WENV170008695
APHM01001812
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1282
1195
-
Leu
GAG
[ENA]
¢þ
>WENV170008852
APHM01010359
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
86
170
+
Leu
GAG
[ENA]
¢þ
>At0775
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
751940
751856
-
Leu
GAG
[Ensembl]
¡û
>WENV170660045
JXWS01108645
[JXWS] soil metagenome; rice field; elevated CO2
639
723
+
Leu
GAG
[ENA]
¢þ
>WENV170660087
JXWS01139147
[JXWS] soil metagenome; rice field; elevated CO2
229
313
+
Leu
GAG
[ENA]
¢þ
>WENV170660834
JXWU01042249
[JXWU] soil metagenome; rice field; organic control Plot
185
269
+
Leu
GAG
[ENA]
¢þ
>WENV170660960
JXWU01070732
[JXWU] soil metagenome; rice field; organic control Plot
322
406
+
Leu
GAG
[ENA]
¢þ
>WENV170661222
JXWU01134225
[JXWU] soil metagenome; rice field; organic control Plot
147
232
+
Leu
GAG
[ENA]
¢þ
>WENV170679902
LFCJ01001324
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5806
5890
+
Leu
GAG
[ENA]
¢þ
>WENV170681737
LFFM01002412
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
796
880
+
Leu
GAG
[ENA]
¢þ
>WENV170682109
LFFM01006186
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5885
5801
-
Leu
GAG
[ENA]
¢þ
>WENV170702419
LKMJ01001843
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7032
6948
-
Leu
GAG
[ENA]
¢þ
>WENV170702697
LKMJ01003564
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8619
8703
+
Leu
GAG
[ENA]
¢þ
>WENV170702890
LKMJ01004542
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9012
8928
-
Leu
GAG
[ENA]
¢þ
>WENV170703435
LKMJ01011561
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6077
5993
-
Leu
GAG
[ENA]
¢þ
>WENV170703932
LKMJ01019167
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5735
5819
+
Leu
GAG
[ENA]
¢þ
>W1910006713
BBJO01000037
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
11638
11554
-
Leu
GAG
[ENA]
¡û
>W1910175084
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
208290
208374
+
Leu
GAG
[ENA]
¡û
>W1910226691
FMZP01000009
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
87276
87192
-
Leu
GAG
[ENA]
¡û
>W1910227140
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
1232792
1232708
-
Leu
GAG
[ENA]
¡û
>W1910228381
FNOF01000004
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
36012
36097
+
Leu
GAG
[ENA]
¡û
>W1910228598
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
530384
530300
-
Leu
GAG
[ENA]
¡û
>W1910229326
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
747863
747947
+
Leu
GAG
[ENA]
¡û
>W1910229825
FOFD01000008
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
162876
162960
+
Leu
GAG
[ENA]
¡û
>W1910229900
FOIC01000007
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
87299
87215
-
Leu
GAG
[ENA]
¡û
>W1910229931
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
178111
178024
-
Leu
GAG
[ENA]
¡û
>W1910230251
FOKW01000008
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
145609
145693
+
Leu
GAG
[ENA]
¡û
>W1910230461
FORO01000050
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
1921
2005
+
Leu
GAG
[ENA]
¡û
>W1910282452
FRAN01000002
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
164337
164421
+
Leu
GAG
[ENA]
¡û
>W1910340465
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
1708770
1708686
-
Leu
GAG
[ENA]
¡û
>W1910340496
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
167323
167407
+
Leu
GAG
[ENA]
¡û
>W1910568526
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
852542
852458
-
Leu
GAG
[ENA]
¡û
>W1910568543
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
47557
47641
+
Leu
GAG
[ENA]
¡û
>W1910569048
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
643543
643627
+
Leu
GAG
[ENA]
¡û
>W1910572709
JNCS01000003
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
302325
302409
+
Leu
GAG
[ENA]
¡û
>W1910575887
JROF01000022
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
69458
69545
+
Leu
GAG
[ENA]
¡û
>W1910583018
JXAN01000063
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
575
659
+
Leu
GAG
[ENA]
¡û
>W1910617601
LIUF01000003
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
330226
330141
-
Leu
GAG
[ENA]
¡û
>W1910646146
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
894165
894081
-
Leu
GAG
[ENA]
¡û
>W1910657580
MASN01000052
Euryarchaeota
Natrialba sp. SSL1 [MASN]
23135
23051
-
Leu
GAG
[ENA]
¡û
>W1910696275
MEIH01000087
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
7748
7664
-
Leu
GAG
[ENA]
¡û
>W1910826105
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
476377
476293
-
Leu
GAG
[ENA]
¡û
>W1911493145
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
609825
609741
-
Leu
GAG
[ENA]
¡û
>W1911591352
PKKI01000074
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
1851
1935
+
Leu
GAG
[ENA]
¡û
>W1911693731
QLVG01000014
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
16084
16168
+
Leu
GAG
[ENA]
¡û
>W1911696809
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
1164649
1164565
-
Leu
GAG
[ENA]
¡û
>W1911709172
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
2585759
2585675
-
Leu
GAG
[ENA]
¡û
>W1911709473
QPLN01000004
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
322569
322654
+
Leu
GAG
[ENA]
¡û
>W1911709611
QPLQ01000004
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
105813
105728
-
Leu
GAG
[ENA]
¡û
>W1911709640
QPLR01000002
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
566010
565926
-
Leu
GAG
[ENA]
¡û
>W1911709883
QPMJ01000002
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
395806
395722
-
Leu
GAG
[ENA]
¡û
>W1911709966
QPND01000002
Euryarchaeota
Saliphagus sp. LR7 [QPND]
302691
302775
+
Leu
GAG
[ENA]
¡û
>W1911769986
QXIJ01000004
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
250594
250510
-
Leu
GAG
[ENA]
¡û
>W1911770028
QXIK01000004
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
338657
338742
+
Leu
GAG
[ENA]
¡û
>W1610000797
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1734070
1734154
+
Leu
GAG
[ENA]
¡û
>W1610001051
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
533917
533833
-
Leu
GAG
[ENA]
¡û
>W1610002962
AEMG01000004
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
197206
197290
+
Leu
GAG
[ENA]
¡û
>W1610003262
AFNT02000007
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
103032
103119
+
Leu
GAG
[ENA]
¡û
>W1610004054
AGFZ01000062
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
34295
34211
-
Leu
GAG
[ENA]
¡û
>W1610004096
AGIM01000006
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
19904
19820
-
Leu
GAG
[ENA]
¡û
>W1610004119
AGIN01000001
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
133943
133859
-
Leu
GAG
[ENA]
¡û
>W1610005367
AJVG01000004
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
173982
174066
+
Leu
GAG
[ENA]
¡û
>W1610011738
AOHS01000057
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
22546
22630
+
Leu
GAG
[ENA]
¡û
>W1610012054
AOHZ01000090
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
1303
1387
+
Leu
GAG
[ENA]
¡û
>W1610012085
AOIA01000119
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
23258
23342
+
Leu
GAG
[ENA]
¡û
>W1610012148
AOIB01000043
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
182647
182731
+
Leu
GAG
[ENA]
¡û
>W1610012171
AOIC01000069
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
5248
5164
-
Leu
GAG
[ENA]
¡û
>W1610012210
AOID01000029
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
176409
176325
-
Leu
GAG
[ENA]
¡û
>W1610012236
AOIE01000008
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
48165
48249
+
Leu
GAG
[ENA]
¡û
>W1610012309
AOII01000080
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
18412
18328
-
Leu
GAG
[ENA]
¡û
>W1610012331
AOIJ01000038
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
21507
21591
+
Leu
GAG
[ENA]
¡û
>W1610012385
AOIK01000025
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
356029
355945
-
Leu
GAG
[ENA]
¡û
>W1610012429
AOIL01000042
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
280065
280149
+
Leu
GAG
[ENA]
¡û
>W1610012466
AOIM01000013
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
34833
34749
-
Leu
GAG
[ENA]
¡û
>W1610012521
AOIN01000064
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
5071
4987
-
Leu
GAG
[ENA]
¡û
>W1610012551
AOIO01000022
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
31627
31711
+
Leu
GAG
[ENA]
¡û
>W1610012617
AOIP01000032
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
236513
236597
+
Leu
GAG
[ENA]
¡û
>W1610012657
AOIQ01000021
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
62667
62583
-
Leu
GAG
[ENA]
¡û
>W1610012675
AOIR01000048
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
144689
144605
-
Leu
GAG
[ENA]
¡û
>W1610012728
AOIS01000036
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
142309
142225
-
Leu
GAG
[ENA]
¡û
>W1610012794
AOIT01000055
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
14277
14361
+
Leu
GAG
[ENA]
¡û
>W1610014151
AOLQ01000065
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
154083
153998
-
Leu
GAG
[ENA]
¡û
>W1610014186
AOLR01000018
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
144497
144582
+
Leu
GAG
[ENA]
¡û
>W1610014244
AOLS01000102
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
191445
191530
+
Leu
GAG
[ENA]
¡û
>W1610014268
AOLW01000015
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
310687
310771
+
Leu
GAG
[ENA]
¡û
>W1610014309
AOLX01000014
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
298964
299049
+
Leu
GAG
[ENA]
¡û
>W1610014386
AOLY01000035
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
128500
128585
+
Leu
GAG
[ENA]
¡û
>W1610014440
AOLZ01000075
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
15501
15417
-
Leu
GAG
[ENA]
¡û
>W1610014453
AOMA01000045
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
54623
54707
+
Leu
GAG
[ENA]
¡û
>W1610018835
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
1031678
1031762
+
Leu
GAG
[ENA]
¡û
>W1610019186
ARPZ01000394
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
1188
1272
+
Leu
GAG
[ENA]
¡û
>W1610061926
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
768089
768005
-
Leu
GAG
[ENA]
¡û
>W1610061947
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
2203426
2203511
+
Leu
GAG
[ENA]
¡û
>W1610082967
CBMA010000008
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
214188
214104
-
Leu
GAG
[ENA]
¡û
>W1610083020
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
396737
396821
+
Leu
GAG
[ENA]
¡û
>W1610671389
LKCV01000277
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
616
532
-
Leu
GAG
[ENA]
¡û
>W1610682292
LKMR01000018
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
9012
8928
-
Leu
GAG
[ENA]
¡û
>W1610682594
LKND01000125
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
5885
5801
-
Leu
GAG
[ENA]
¡û
>W1610682627
LKNF01000061
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
796
880
+
Leu
GAG
[ENA]
¡û
>W1610881026
LRHL01000023
Euryarchaeota
Haloarcula sp. K1 [LRHL]
327086
327001
-
Leu
GAG
[ENA]
¡û
>W1610986961
LWHG01000031
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
90175
90091
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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