This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56410 (61 seq.)
>A171001291
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
468685
468770
+
Ser
CGA
-
¡û
>A171002486
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
13058
12973
-
Ser
CGA
-
¡û
>A171002720
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1927964
1927880
-
Ser
CGA
-
¡û
>A171003121
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
716557
716472
-
Ser
CGA
-
¡û
>A171003499
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1376484
1376399
-
Ser
CGA
-
¡û
>A171006919
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2556848
2556933
+
Ser
CGA
-
¡û
>A171006994
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
768638
768723
+
Ser
CGA
-
¡û
>WENV170679987
LFCJ01002213
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3195
3280
+
Ser
CGA
[ENA]
¢þ
>WENV170680390
LFCJ01010245
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4486
4571
+
Ser
CGA
[ENA]
¢þ
>WENV170681061
LFFM01000009
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
66009
66093
+
Ser
CGA
[ENA]
¢þ
>WENV170681597
LFFM01001597
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
14417
14502
+
Ser
CGA
[ENA]
¢þ
>WENV170681975
LFFM01004441
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
3490
3405
-
Ser
CGA
[ENA]
¢þ
>WENV170702328
LKMJ01001298
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
19173
19089
-
Ser
CGA
[ENA]
¢þ
>WENV170703374
LKMJ01010420
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2035
1950
-
Ser
CGA
[ENA]
¢þ
>WENV170703441
LKMJ01011712
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
629
714
+
Ser
CGA
[ENA]
¢þ
>WENV170703492
LKMJ01012499
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1467
1552
+
Ser
CGA
[ENA]
¢þ
>PL191000880
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
457481
457566
+
Ser
CGA
[ENA]
¡û
>W1910226708
FMZP01000017
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
27060
26976
-
Ser
CGA
[ENA]
¡û
>W1910227127
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
1194518
1194603
+
Ser
CGA
[ENA]
¡û
>W1910229895
FOIC01000004
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
27605
27521
-
Ser
CGA
[ENA]
¡û
>W1910229929
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
549465
549380
-
Ser
CGA
[ENA]
¡û
>W1910230260
FOKW01000012
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
2880
2795
-
Ser
CGA
[ENA]
¡û
>W1910230447
FORO01000015
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
5429
5514
+
Ser
CGA
[ENA]
¡û
>W1910282443
FRAN01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
961400
961484
+
Ser
CGA
[ENA]
¡û
>W1910340451
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
670127
670211
+
Ser
CGA
[ENA]
¡û
>W1910340532
FTNR01000001
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
199280
199195
-
Ser
CGA
[ENA]
¡û
>W1910568523
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1525902
1525987
+
Ser
CGA
[ENA]
¡û
>W1910568562
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1229475
1229391
-
Ser
CGA
[ENA]
¡û
>W1910569075
JHUT02000006
Euryarchaeota
Natrinema mahii H13 [JHUT]
169549
169464
-
Ser
CGA
[ENA]
¡û
>W1910575899
JROF01000039
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
19184
19099
-
Ser
CGA
[ENA]
¡û
>W1910646144
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1405146
1405061
-
Ser
CGA
[ENA]
¡û
>W1910657549
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
239690
239774
+
Ser
CGA
[ENA]
¡û
>W1910696309
MEIH01000391
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
19082
19166
+
Ser
CGA
[ENA]
¡û
>W1911591335
PKKI01000018
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
80405
80320
-
Ser
CGA
[ENA]
¡û
>W1610001060
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
280733
280648
-
Ser
CGA
[ENA]
¡û
>W1610002986
AEMG01000019
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
117088
117175
+
Ser
CGA
[ENA]
¡û
>W1610004064
AGFZ01000096
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
24450
24535
+
Ser
CGA
[ENA]
¡û
>W1610004077
AGIM01000002
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
81020
81105
+
Ser
CGA
[ENA]
¡û
>W1610011710
AOHS01000010
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
74696
74781
+
Ser
CGA
[ENA]
¡û
>W1610011936
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
188933
188848
-
Ser
CGA
[ENA]
¡û
>W1610012058
AOHZ01000095
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
17424
17340
-
Ser
CGA
[ENA]
¡û
>W1610012094
AOIA01000151
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
53673
53758
+
Ser
CGA
[ENA]
¡û
>W1610012130
AOIB01000021
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
228023
228108
+
Ser
CGA
[ENA]
¡û
>W1610012190
AOIC01000124
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
6129
6214
+
Ser
CGA
[ENA]
¡û
>W1610012246
AOIE01000036
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
56827
56742
-
Ser
CGA
[ENA]
¡û
>W1610012460
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
220343
220427
+
Ser
CGA
[ENA]
¡û
>W1610012519
AOIN01000064
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
105376
105292
-
Ser
CGA
[ENA]
¡û
>W1610012658
AOIQ01000022
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
18483
18568
+
Ser
CGA
[ENA]
¡û
>W1610012785
AOIT01000036
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
24419
24334
-
Ser
CGA
[ENA]
¡û
>W1610014424
AOLZ01000037
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
64669
64754
+
Ser
CGA
[ENA]
¡û
>W1610014455
AOMA01000049
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
68371
68456
+
Ser
CGA
[ENA]
¡û
>W1610018847
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
2832114
2832027
-
Ser
CGA
[ENA]
¡û
>W1610082964
CBMA010000005
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
57418
57503
+
Ser
CGA
[ENA]
¡û
>W1610083032
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
188838
188753
-
Ser
CGA
[ENA]
¡û
>W1610671365
LKCV01000016
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
18119
18035
-
Ser
CGA
[ENA]
¡û
>W1610682136
LKMK01000063
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
3195
3280
+
Ser
CGA
[ENA]
¡û
>W1610682298
LKMR01000075
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
629
714
+
Ser
CGA
[ENA]
¡û
>W1610682540
LKNC01000029
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
14417
14502
+
Ser
CGA
[ENA]
¡û
>W1610682555
LKND01000001
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
66009
66093
+
Ser
CGA
[ENA]
¡û
>W1610682665
LKNG01000117
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
3490
3405
-
Ser
CGA
[ENA]
¡û
>W1610986963
LWHG01000031
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
190
106
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK