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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56412 (58 seq.)
>W1711221609
LXRG01000098
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
118907
118994
+
Ser
GGA
[ENA]
¡û
>W1711434616
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
4044867
4044954
+
Ser
GGA
[ENA]
¡û
>W1711688873
MSDO01000081
Gammaproteobacteria
Salinicola socius [MSDO]
376
463
+
Ser
GGA
[ENA]
¡û
>W1711688890
MSDO01000128
Gammaproteobacteria
Salinicola socius [MSDO]
281
194
-
Ser
GGA
[ENA]
¡û
>W1711688894
MSDO01000140
Gammaproteobacteria
Salinicola socius [MSDO]
56
143
+
Ser
GGA
[ENA]
¡û
>W1711688909
MSDP01000009
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
115130
115043
-
Ser
GGA
[ENA]
¡û
>C171117995
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
3201377
3201464
+
Ser
GGA
-
¡û
>W131095876
AOPO01000013
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
50848
50935
+
Ser
GGA
[ENA]
¡û
>W141093346
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1025925
1026012
+
Ser
GGA
[ENA]
¡û
>W141212658
AZQX01000014
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
1591
1678
+
Ser
GGA
[ENA]
¡û
>W141212716
AZQX01000369
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
9550
9637
+
Ser
GGA
[ENA]
¡û
>W141252165
CBRE010000048
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
31158
31071
-
Ser
GGA
[ENA]
¡û
>WENV182547906
OJBU01001770
[OJBU] seawater metagenome; Sea water
544
457
-
Ser
GGA
[ENA]
¢þ
>WENV182548851
OJBX01000533
[OJBX] seawater metagenome; Sea water
4160
4247
+
Ser
GGA
[ENA]
¢þ
>WENV182568013
OJEP01011601
[OJEP] seawater metagenome; Sea water
632
719
+
Ser
GGA
[ENA]
¢þ
>WENV182576054
OJFX01001988
[OJFX] seawater metagenome; Sea water
4147
4234
+
Ser
GGA
[ENA]
¢þ
>WENV182585508
OJHH01041381
[OJHH] seawater metagenome; Sea water
238
325
+
Ser
GGA
[ENA]
¢þ
>WENV182591177
OJIL01000200
[OJIL] seawater metagenome; Sea water
364
277
-
Ser
GGA
[ENA]
¢þ
>WENV182591634
OJIO01001053
[OJIO] seawater metagenome; Sea water
9444
9357
-
Ser
GGA
[ENA]
¢þ
>W141275883
JADJ01000002
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
109052
108965
-
Ser
GGA
[ENA]
¡û
>WENV183062446
OLID01012929
[OLID] seawater metagenome; Sea water
793
880
+
Ser
GGA
[ENA]
¢þ
>WENV170014258
AXCI01003336
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
26712
26625
-
Ser
GGA
[ENA]
¢þ
>WENV170112397
CEGE01004886
[CEGE] microbial mat metagenome; grass silage
4148
4235
+
Ser
GGA
[ENA]
¢þ
>WENV170112477
CEGF01000889
[CEGF] microbial mat metagenome; grass silage
625
712
+
Ser
GGA
[ENA]
¢þ
>WENV170692887
LGOV01041841
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
3556
3643
+
Ser
GGA
[ENA]
¢þ
>C191165514
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
1434
1347
-
Ser
GGA
-
¡û
>W141564644
JIAY01000003
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
109052
108965
-
Ser
GGA
[ENA]
¡û
>W141727042
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
1970909
1970822
-
Ser
GGA
[ENA]
¡û
>W141754435
JNVS01000007
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
11445
11358
-
Ser
GGA
[ENA]
¡û
>W141818879
JQLV01000001
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
1028205
1028292
+
Ser
GGA
[ENA]
¡û
>W1910006958
BBQX01000036
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
4090
4177
+
Ser
GGA
[ENA]
¡û
>W1911148570
NPEY01000008
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
43092
43005
-
Ser
GGA
[ENA]
¡û
>W1911245428
NSKB01000002
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
111522
111435
-
Ser
GGA
[ENA]
¡û
>W1911539886
ONZI01000003
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
653201
653288
+
Ser
GGA
[ENA]
¡û
>W1911747093
QWBW01000015
Gammaproteobacteria
Halomonas coralii 362.1 [QWBW]
124892
124805
-
Ser
GGA
[ENA]
¡û
>W1810156461
PJBI01000036
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
109055
108968
-
Ser
GGA
[ENA]
¡û
>W1810157201
PJBT01000020
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
287211
287298
+
Ser
GGA
[ENA]
¡û
>W1810200072
PNRG01000029
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
4311
4398
+
Ser
GGA
[ENA]
¡û
>W1810424669
PYUQ02000016
Gammaproteobacteria
Halomonas sp. SL1 [PYUQ]
319050
318963
-
Ser
GGA
[ENA]
¡û
>W1810444243
PZJN01000004
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
100350
100263
-
Ser
GGA
[ENA]
¡û
>W1810444414
PZJQ01000004
Gammaproteobacteria
Salinicola halimionae CPA60 [PZJQ]
736103
736190
+
Ser
GGA
[ENA]
¡û
>W1810444485
PZJR01000009
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
192666
192753
+
Ser
GGA
[ENA]
¡û
>W1810444555
PZJS01000008
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
193623
193710
+
Ser
GGA
[ENA]
¡û
>W1810722077
QNTU01000020
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
4351
4438
+
Ser
GGA
[ENA]
¡û
>W1810758309
QPIJ01000026
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
35559
35472
-
Ser
GGA
[ENA]
¡û
>W1810760673
QPKI01000011
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
28611
28698
+
Ser
GGA
[ENA]
¡û
>W1810787004
QRDJ01000008
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
703332
703419
+
Ser
GGA
[ENA]
¡û
>C151075876
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
3308694
3308607
-
Ser
GGA
[Ensembl]
¡û
>C151104168
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
3595387
3595300
-
Ser
GGA
-
¡û
>C11110089
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
1171251
1171338
+
Ser
GGA
[Ensembl]
¡û
>W1511479181
JWHY01000002
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
996503
996590
+
Ser
GGA
[ENA]
¡û
>W11180601
AGIB01000060
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
4379
4466
+
Ser
GGA
[ENA]
¡û
>W121016429
AGQZ01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
15342
15255
-
Ser
GGA
[ENA]
¡û
>W1611006078
LXRG01000098
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
118907
118994
+
Ser
GGA
[ENA]
¡û
>W1710518719
FNEF01000001
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
337904
337991
+
Ser
GGA
[ENA]
¡û
>W1710582931
FQUJ01000006
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
164623
164710
+
Ser
GGA
[ENA]
¡û
>W1710591835
FRCA01000001
Gammaproteobacteria
Halomonas cupida [FRCA]
67330
67417
+
Ser
GGA
[ENA]
¡û
>W1710628359
JPUA01000034
Gammaproteobacteria
Halomonas campaniensis [JPUA]
852019
852106
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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