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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56437 (62 seq.)
>A171000741
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
2903629
2903714
+
Leu
GAG
-
¡û
>A171000844
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
1099965
1099881
-
Leu
GAG
-
¡û
>A171001595
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
1703373
1703289
-
Leu
GAG
-
¡û
>A171003729
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2255634
2255718
+
Leu
GAG
-
¡û
>A171004142
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1844525
1844609
+
Leu
GAG
-
¡û
>A171006900
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
322403
322318
-
Leu
GAG
-
¡û
>WENV180318183
OBKM01000042
[OBKM] metagenome; water
3198
3282
+
Leu
GAG
[ENA]
¢þ
>WENV181413951
OGCK01178313
[OGCK] hot springs metagenome; hot spring sediment
450
534
+
Leu
GAG
[ENA]
¢þ
>WENV170679723
LFCJ01000198
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
13219
13303
+
Leu
GAG
[ENA]
¢þ
>WENV170679807
LFCJ01000578
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
14401
14485
+
Leu
GAG
[ENA]
¢þ
>WENV170679872
LFCJ01001139
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5696
5612
-
Leu
GAG
[ENA]
¢þ
>WENV170680157
LFCJ01004872
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2338
2422
+
Leu
GAG
[ENA]
¢þ
>WENV170680328
LFCJ01008504
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1500
1416
-
Leu
GAG
[ENA]
¢þ
>WENV170680515
LFCJ01013188
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1949
2033
+
Leu
GAG
[ENA]
¢þ
>WENV170681125
LFFM01000084
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8986
8902
-
Leu
GAG
[ENA]
¢þ
>WENV170681477
LFFM01001047
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
16010
16094
+
Leu
GAG
[ENA]
¢þ
>WENV170681627
LFFM01001733
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7053
7138
+
Leu
GAG
[ENA]
¢þ
>WENV170682029
LFFM01005169
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6406
6490
+
Leu
GAG
[ENA]
¢þ
>WENV170702079
LKMJ01000456
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7476
7389
-
Leu
GAG
[ENA]
¢þ
>WENV170702190
LKMJ01000825
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18565
18478
-
Leu
GAG
[ENA]
¢þ
>WENV170702444
LKMJ01001960
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4655
4571
-
Leu
GAG
[ENA]
¢þ
>WENV170702997
LKMJ01005322
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12011
12098
+
Leu
GAG
[ENA]
¢þ
>WENV170703019
LKMJ01005678
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6048
5963
-
Leu
GAG
[ENA]
¢þ
>WENV170703138
LKMJ01007026
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2203
2118
-
Leu
GAG
[ENA]
¢þ
>WENV170703260
LKMJ01008575
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6150
6234
+
Leu
GAG
[ENA]
¢þ
>WENV170703263
LKMJ01008621
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9414
9330
-
Leu
GAG
[ENA]
¢þ
>WENV170703556
LKMJ01013522
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5454
5538
+
Leu
GAG
[ENA]
¢þ
>WENV170703688
LKMJ01015593
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6207
6123
-
Leu
GAG
[ENA]
¢þ
>W1910006891
BBMO01000002
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
179
95
-
Leu
GAG
[ENA]
¡û
>W1910226733
FNBK01000008
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
47980
48065
+
Leu
GAG
[ENA]
¡û
>W1910226908
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
690100
690016
-
Leu
GAG
[ENA]
¡û
>W1910227089
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
903001
902917
-
Leu
GAG
[ENA]
¡û
>W1910229692
FOCX01000005
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
169696
169781
+
Leu
GAG
[ENA]
¡û
>W1910230361
FOOQ01000002
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
192451
192535
+
Leu
GAG
[ENA]
¡û
>W1910230715
FOYS01000004
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
251005
251089
+
Leu
GAG
[ENA]
¡û
>W1910230752
FOYT01000002
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
253568
253652
+
Leu
GAG
[ENA]
¡û
>W1910230813
FOZK01000003
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
589304
589388
+
Leu
GAG
[ENA]
¡û
>W1910230838
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
981939
981855
-
Leu
GAG
[ENA]
¡û
>W1910340531
FTNR01000001
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
339114
339198
+
Leu
GAG
[ENA]
¡û
>W1911433978
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2337380
2337464
+
Leu
GAG
[ENA]
¡û
>W1911572230
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
2743861
2743777
-
Leu
GAG
[ENA]
¡û
>W1911682236
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
735237
735153
-
Leu
GAG
[ENA]
¡û
>W1911717832
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
2791770
2791686
-
Leu
GAG
[ENA]
¡û
>W1911717983
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
334861
334777
-
Leu
GAG
[ENA]
¡û
>W1911749425
QWGG01000013
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
101414
101329
-
Leu
GAG
[ENA]
¡û
>W1610000763
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
2307145
2307061
-
Leu
GAG
[ENA]
¡û
>W1610000830
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
514785
514870
+
Leu
GAG
[ENA]
¡û
>W1610011759
AOHT01000010
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
106681
106597
-
Leu
GAG
[ENA]
¡û
>W1610011865
AOHV01000035
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
14865
14949
+
Leu
GAG
[ENA]
¡û
>W1610011916
AOHW01000035
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
84672
84588
-
Leu
GAG
[ENA]
¡û
>W1610011935
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
317554
317638
+
Leu
GAG
[ENA]
¡û
>W1610011979
AOHY01000007
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
14214
14298
+
Leu
GAG
[ENA]
¡û
>W1610012820
AOIU01000028
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
151331
151244
-
Leu
GAG
[ENA]
¡û
>W1610012844
AOIV01000003
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
39861
39777
-
Leu
GAG
[ENA]
¡û
>W1610018997
AQZY01000021
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
211395
211479
+
Leu
GAG
[ENA]
¡û
>W1610019043
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
85075
84991
-
Leu
GAG
[ENA]
¡û
>W1610029935
AXZD01000008
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
283054
282970
-
Leu
GAG
[ENA]
¡û
>W1610682150
LKMK01000226
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
1949
2033
+
Leu
GAG
[ENA]
¡û
>W1610682196
LKMM01000073
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
2338
2422
+
Leu
GAG
[ENA]
¡û
>W1610682651
LKNG01000022
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
16010
16094
+
Leu
GAG
[ENA]
¡û
>W1610682675
LKNH01000033
Euryarchaeota
Halobacteriaceae archaeon Tc-Br11_E2g27 [LKNH]
7053
7138
+
Leu
GAG
[ENA]
¡û
>W1610925041
LTAZ01000004
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
621983
622067
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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