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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56442 (34 seq.)
>A171002636
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2152083
2151999
-
Ser
CGA
-
¡û
>A171003969
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2163516
2163432
-
Ser
CGA
-
¡û
>A171005826
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
769076
768992
-
Ser
CGA
-
¡û
>A171006897
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
889091
889007
-
Ser
CGA
-
¡û
>A171007434
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
377935
378020
+
Ser
CGA
-
¡û
>WENV170008847
APHM01010125
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
460
544
+
Ser
CGA
[ENA]
¢þ
>At0780
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1517540
1517456
-
Ser
CGA
[Ensembl]
¡û
>At0796
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
191112
191196
+
Ser
CGA
[Ensembl]
¡û
>W1910175121
BIXZ01000005
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
88204
88120
-
Ser
CGA
[ENA]
¡û
>W1910226726
FNBK01000004
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
155667
155752
+
Ser
CGA
[ENA]
¡û
>W1910228388
FNOF01000005
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
99715
99630
-
Ser
CGA
[ENA]
¡û
>W1910229684
FOCX01000002
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
201012
201096
+
Ser
CGA
[ENA]
¡û
>W1910230038
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
1249220
1249136
-
Ser
CGA
[ENA]
¡û
>W1910583038
JXAO01000003
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
108997
108913
-
Ser
CGA
[ENA]
¡û
>W1910617593
LIUF01000002
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
593994
594078
+
Ser
CGA
[ENA]
¡û
>W1911709457
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
369336
369252
-
Ser
CGA
[ENA]
¡û
>W1911709594
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
328021
327937
-
Ser
CGA
[ENA]
¡û
>W1911770013
QXIK01000002
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
533206
533290
+
Ser
CGA
[ENA]
¡û
>W1610014145
AOLQ01000042
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
99620
99535
-
Ser
CGA
[ENA]
¡û
>W1610014167
AOLR01000003
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
53820
53735
-
Ser
CGA
[ENA]
¡û
>W1610014204
AOLS01000002
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
100728
100643
-
Ser
CGA
[ENA]
¡û
>W1610014287
AOLW01000047
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
120329
120413
+
Ser
CGA
[ENA]
¡û
>W1610014340
AOLX01000026
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
115831
115915
+
Ser
CGA
[ENA]
¡û
>W1610014376
AOLY01000009
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
21370
21455
+
Ser
CGA
[ENA]
¡û
>W1610061921
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1487428
1487344
-
Ser
CGA
[ENA]
¡û
>W1610061942
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1468572
1468659
+
Ser
CGA
[ENA]
¡û
>W1610085083
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
159652
159737
+
Ser
CGA
[ENA]
¡û
>W1610085119
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
2304752
2304667
-
Ser
CGA
[ENA]
¡û
>W1610085158
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
2348151
2348066
-
Ser
CGA
[ENA]
¡û
>W1610085197
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
2390003
2389918
-
Ser
CGA
[ENA]
¡û
>W1610085218
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
168436
168521
+
Ser
CGA
[ENA]
¡û
>W1610085282
CEMR01000002
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
168445
168530
+
Ser
CGA
[ENA]
¡û
>W1610085300
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
168416
168501
+
Ser
CGA
[ENA]
¡û
>W1610881045
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
925559
925643
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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