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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56444 (24 seq.)
>A171000771
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
1525321
1525405
+
Leu
TAA
-
¡û
>A171002647
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
501070
500986
-
Leu
TAA
-
¡û
>A171003980
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
513471
513387
-
Leu
TAA
-
¡û
>A171005816
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2107259
2107175
-
Leu
TAA
-
¡û
>At0791
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2911451
2911367
-
Leu
TAA
[Ensembl]
¡û
>WENV170659958
JXWS01056567
[JXWS] soil metagenome; rice field; elevated CO2
85
1
-
Leu
TAA
[ENA]
¢þ
>W1910175089
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
1096905
1096989
+
Leu
TAA
[ENA]
¡û
>W1910228349
FNOF01000001
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
272487
272403
-
Leu
TAA
[ENA]
¡û
>W1910583057
JXAO01000021
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
10279
10195
-
Leu
TAA
[ENA]
¡û
>W1910617579
LIUF01000001
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
322683
322767
+
Leu
TAA
[ENA]
¡û
>W1911709469
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
258620
258536
-
Leu
TAA
[ENA]
¡û
>W1911709600
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
631456
631540
+
Leu
TAA
[ENA]
¡û
>W1911770004
QXIK01000001
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
607395
607479
+
Leu
TAA
[ENA]
¡û
>W1610000809
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
2201392
2201308
-
Leu
TAA
[ENA]
¡û
>W1610014158
AOLQ01000069
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
272393
272309
-
Leu
TAA
[ENA]
¡û
>W1610014195
AOLR01000021
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
350201
350285
+
Leu
TAA
[ENA]
¡û
>W1610014218
AOLS01000060
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
185054
185138
+
Leu
TAA
[ENA]
¡û
>W1610014280
AOLW01000023
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
76442
76526
+
Leu
TAA
[ENA]
¡û
>W1610014320
AOLX01000017
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
215912
215996
+
Leu
TAA
[ENA]
¡û
>W1610014398
AOLY01000039
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
154386
154470
+
Leu
TAA
[ENA]
¡û
>W1610018987
AQZY01000010
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
268332
268248
-
Leu
TAA
[ENA]
¡û
>W1610061911
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2825611
2825527
-
Leu
TAA
[ENA]
¡û
>W1610061932
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
43015
43099
+
Leu
TAA
[ENA]
¡û
>W1610881014
LRHL01000010
Euryarchaeota
Haloarcula sp. K1 [LRHL]
104665
104581
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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