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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56458 (30 seq.)
>A171004400
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1374156
1374240
+
Leu
GAG
-
¡û
>A171006158
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1374498
1374582
+
Leu
GAG
-
¡û
>A171007443
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
1644463
1644547
+
Leu
GAG
-
¡û
>WENV180318437
OBKM01000864
[OBKM] metagenome; water
85
1
-
Leu
GAG
[ENA]
¢þ
>At1693
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
1009155
1009239
+
Leu
GAG
[Ensembl]
¡û
>WENV170682288
LFFM01008622
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2629
2545
-
Leu
GAG
[ENA]
¢þ
>W1910006669
BBJN01000030
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
111134
111048
-
Leu
GAG
[ENA]
¡û
>W1910006909
BBMP01000021
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
97321
97406
+
Leu
GAG
[ENA]
¡û
>W1910011008
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
860582
860667
+
Leu
GAG
[ENA]
¡û
>W1910193787
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
2044631
2044715
+
Leu
GAG
[ENA]
¡û
>W1910228425
FNPB01000003
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
80313
80229
-
Leu
GAG
[ENA]
¡û
>W1910228515
FNQT01000001
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
65385
65301
-
Leu
GAG
[ENA]
¡û
>W1910230606
FOXI01000001
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
199941
199856
-
Leu
GAG
[ENA]
¡û
>W1910828035
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
1012669
1012585
-
Leu
GAG
[ENA]
¡û
>C151003909
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
1105094
1105179
+
Leu
GAG
[Ensembl]
¡û
>W1610014557
AOMC01000152
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
182620
182704
+
Leu
GAG
[ENA]
¡û
>W1610014583
AOMD01000016
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
4812
4728
-
Leu
GAG
[ENA]
¡û
>W1610014686
AOMF01000165
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
237655
237739
+
Leu
GAG
[ENA]
¡û
>W1610040531
BAFM01000001
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
167091
167007
-
Leu
GAG
[ENA]
¡û
>W1610041328
BANO01000003
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 [BANO]
6634
6550
-
Leu
GAG
[ENA]
¡û
>W1610041518
BATA01000002
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
87616
87700
+
Leu
GAG
[ENA]
¡û
>W1610061863
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
1672107
1672191
+
Leu
GAG
[ENA]
¡û
>W1610085061
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
403312
403396
+
Leu
GAG
[ENA]
¡û
>W1610085126
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
1056247
1056163
-
Leu
GAG
[ENA]
¡û
>W1610085165
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
1099198
1099114
-
Leu
GAG
[ENA]
¡û
>W1610085204
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
1098114
1098030
-
Leu
GAG
[ENA]
¡û
>W1610085227
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
1460697
1460781
+
Leu
GAG
[ENA]
¡û
>W1610085260
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
403446
403530
+
Leu
GAG
[ENA]
¡û
>W1610085309
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
1417288
1417372
+
Leu
GAG
[ENA]
¡û
>W1610617555
LGUC01000001
Euryarchaeota
Halolamina pelagica CDK2 [LGUC]
2086561
2086646
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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