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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56510 (25 seq.)
>W1710894566
LNGM01000016
Gammaproteobacteria
Photobacterium sanguinicancri [LNGM]
9
96
+
Ser
GGA
[ENA]
¡û
>C171046137
CP016095
Gammaproteobacteria
Vibrio anguillarum MVAV6203 [CP016095]
1887769
1887682
-
Ser
GGA
-
¡û
>WENV170387600
CETY01452499
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2926
3013
+
Ser
GGA
[ENA]
¢þ
>C181045065
CP020534
Gammaproteobacteria
Vibrio anguillarum 425 [CP020533, CP020534]
1253193
1253280
+
Ser
GGA
-
¡û
>C181055185
CP021980
Gammaproteobacteria
Vibrio anguillarum 87-9-116 [CP021980, CP021981]
1948633
1948546
-
Ser
GGA
-
¡û
>C181071911
CP022741
Gammaproteobacteria
Vibrio qinghaiensis Q67 [CP022741, CP022742]
1076110
1076197
+
Ser
GGA
-
¡û
>W1910007143
BCUP01000001
Gammaproteobacteria
Vibrio halioticoli IAM 14596 [BCUP]
824813
824900
+
Ser
GGA
[ENA]
¡û
>C141007048
CP006699
Gammaproteobacteria
Vibrio anguillarum M3 [CP006699, CP006700]
1403743
1403830
+
Ser
GGA
[Ensembl]
¡û
>W1910784528
MPZM01000005
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
30126
30039
-
Ser
GGA
[ENA]
¡û
>W1910784582
MPZM01000085
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
2033
2120
+
Ser
GGA
[ENA]
¡û
>W1910872486
NDHZ01000045
Gammaproteobacteria
Vibrio sp. V04_P4A5T148 [NDHZ]
10789
10702
-
Ser
GGA
[ENA]
¡û
>W1910872673
NDIC01000404
Gammaproteobacteria
Vibrio sp. V07_P2A8T137 [NDIC]
2767
2680
-
Ser
GGA
[ENA]
¡û
>W1910872674
NDID01000019
Gammaproteobacteria
Vibrio sp. V08_P9A1T1 [NDID]
5716
5629
-
Ser
GGA
[ENA]
¡û
>W1910872905
NDIG01000230
Gammaproteobacteria
Vibrio sp. V11_P1A41T118 [NDIG]
10789
10702
-
Ser
GGA
[ENA]
¡û
>W1910873417
NDIN01000030
Gammaproteobacteria
Vibrio sp. V20_P4S3T152 [NDIN]
5786
5699
-
Ser
GGA
[ENA]
¡û
>W1810085696
PFXK01000001
Gammaproteobacteria
Vibrio sp. HA2012 [PFXK]
172639
172726
+
Ser
GGA
[ENA]
¡û
>W1810222443
POSJ01000009
Gammaproteobacteria
Vibrio diazotrophicus 60.18M [POSJ]
179864
179951
+
Ser
GGA
[ENA]
¡û
>W1810222486
POSK01000002
Gammaproteobacteria
Vibrio diazotrophicus 60.27F [POSK]
520496
520583
+
Ser
GGA
[ENA]
¡û
>W10107668
ACZP01000013
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
1087921
1087834
-
Ser
GGA
[ENA]
¡û
>W11110055
ACZP01000013
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
1087921
1087834
-
Ser
GGA
[ENA]
¡û
>W1511403633
JTLH01000010
Gammaproteobacteria
Vibrio sp. ZOR0018 [JTLH]
34063
33976
-
Ser
GGA
[ENA]
¡û
>W11153031
AEZC01000100
Gammaproteobacteria
Vibrio ordalii ATCC 33509 [AEZC]
53586
53499
-
Ser
GGA
[ENA]
¡û
>W121072132
AJYP01000155
Gammaproteobacteria
Vibrio genomosp. F10 F10 str. 9ZC157 [AJYP]
28908
28995
+
Ser
GGA
[ENA]
¡û
>W121072271
AJYT01000088
Gammaproteobacteria
Vibrio anguillarum FF-93 [AJYT]
34237
34150
-
Ser
GGA
[ENA]
¡û
>W1610754970
LNGM01000016
Gammaproteobacteria
Photobacterium sanguinicancri [LNGM]
9
96
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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