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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56510 (13 seq.)
>A171000263
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
962389
962475
+
Leu
TAG
-
¡û
>A171001536
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1463407
1463493
+
Leu
TAG
-
¡û
>A171002508
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1686640
1686554
-
Leu
TAG
-
¡û
>WENV180332410
OBLD01004535
[OBLD] metagenome; water
162
249
+
Leu
TAG
[ENA]
¢þ
>At1059
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1700264
1700348
+
Leu
TAG
[Ensembl]
¡û
>At1109
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
893810
893726
-
Leu
TAG
[Ensembl]
¡û
>At1151
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1601086
1601002
-
Leu
TAG
[Ensembl]
¡û
>At1185
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
975284
975200
-
Leu
TAG
[Ensembl]
¡û
>W1610000342
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
206148
206062
-
Leu
TAG
[ENA]
¡û
>W1610000354
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
711855
711769
-
Leu
TAG
[ENA]
¡û
>W1610000451
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
94899
94985
+
Leu
TAG
[ENA]
¡û
>W1610000558
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
63898
63984
+
Leu
TAG
[ENA]
¡û
>W1610000612
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
111335
111249
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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