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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56513 (20 seq.)
>A171000495
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1880809
1880722
-
Leu
TAA
-
¡û
>A171000716
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
388133
388046
-
Leu
TAA
-
¡û
>A171002201
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
97736
97649
-
Leu
TAA
-
¡û
>A171002293
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
496321
496408
+
Leu
TAA
-
¡û
>A171003287
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1412057
1411970
-
Leu
TAA
-
¡û
>A171003335
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
544229
544142
-
Leu
TAA
-
¡û
>A171003371
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1242113
1242026
-
Leu
TAA
-
¡û
>A171003869
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
465634
465721
+
Leu
TAA
-
¡û
>A171004444
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
967158
967245
+
Leu
TAA
-
¡û
>A171005884
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1685906
1685993
+
Leu
TAA
-
¡û
>A171006378
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
297796
297709
-
Leu
TAA
-
¡û
>A171007518
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1632815
1632728
-
Leu
TAA
-
¡û
>At1862
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1443697
1443610
-
Leu
TAA
[Ensembl]
¡û
>At1906
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1358033
1357946
-
Leu
TAA
[Ensembl]
¡û
>WENV170676317
LDZR01002238
[LDZR] terrestrial metagenome; oil reservoir sample K2
17163
17076
-
Leu
TAA
[ENA]
¢þ
>WENV170676724
LDZS01002036
[LDZS] terrestrial metagenome; oil reservoir sample K3
26057
25970
-
Leu
TAA
[ENA]
¢þ
>W1910200315
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
10776
10863
+
Leu
TAA
[ENA]
¡û
>W1610004923
AHVB01000044
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
6851
6938
+
Leu
TAA
[ENA]
¡û
>W1610612822
LGFD01000017
Euryarchaeota
Thermococcus sibiricus [LGFD]
17163
17076
-
Leu
TAA
[ENA]
¡û
>W1610613036
LGFJ01000007
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
26057
25970
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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