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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56521 (21 seq.)
>A171004384
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
851550
851465
-
Leu
TAA
-
¡û
>A171005298
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
907346
907431
+
Leu
TAA
-
¡û
>A171005433
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1883982
1883898
-
Leu
TAA
-
¡û
>A171005490
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1850196
1850112
-
Leu
TAA
-
¡û
>A171005539
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1985189
1985104
-
Leu
TAA
-
¡û
>A171005569
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
2267297
2267382
+
Leu
TAA
-
¡û
>A171005654
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
857589
857504
-
Leu
TAA
-
¡û
>At1454
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
4042057
4042141
+
Leu
TAA
[Ensembl]
¡û
>WENV170784299
MCHG01000554
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
4377
4464
+
Leu
TAA
[ENA]
¢þ
>W1910569450
JJOV01000060
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
10499
10584
+
Leu
TAA
[ENA]
¡û
>W1910569481
JJOW01000067
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
10199
10284
+
Leu
TAA
[ENA]
¡û
>W1910569543
JJOX01000043
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
20217
20302
+
Leu
TAA
[ENA]
¡û
>W1910569628
JJOY01000052
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
23855
23770
-
Leu
TAA
[ENA]
¡û
>W1910569648
JJOZ01000022
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
92893
92978
+
Leu
TAA
[ENA]
¡û
>W1910571598
JJQL01000075
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
61584
61669
+
Leu
TAA
[ENA]
¡û
>W1910572269
JJQY01000091
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
17300
17215
-
Leu
TAA
[ENA]
¡û
>W1910635234
LMVP01000031
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
1591
1676
+
Leu
TAA
[ENA]
¡û
>W1910655400
LZPK01000271
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
6575
6660
+
Leu
TAA
[ENA]
¡û
>W1910694806
MDTP02000168
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
4377
4462
+
Leu
TAA
[ENA]
¡û
>W1610000027
AAAR03000007
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
33152
33237
+
Leu
TAA
[ENA]
¡û
>W1610048606
BBEF01000041
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
22723
22636
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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