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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56523 (85 seq.)
>A171004372
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2597713
2597626
-
Leu
TAG
-
¡û
>A171004529
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2762537
2762449
-
Leu
TAG
-
¡û
>A171004579
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1268053
1268141
+
Leu
TAG
-
¡û
>A171004656
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
720699
720613
-
Leu
TAG
-
¡û
>A171004708
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
689753
689667
-
Leu
TAG
-
¡û
>A171004789
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4407895
4407981
+
Leu
TAG
-
¡û
>A171004898
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4791361
4791447
+
Leu
TAG
-
¡û
>A171004974
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
645279
645194
-
Leu
TAG
-
¡û
>A171005130
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
617022
616937
-
Leu
TAG
-
¡û
>A171005183
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
649879
649794
-
Leu
TAG
-
¡û
>A171005215
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
3544327
3544413
+
Leu
TAG
-
¡û
>A171005289
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
720203
720117
-
Leu
TAG
-
¡û
>A171005315
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3838114
3838201
+
Leu
TAG
-
¡û
>A171005422
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3824181
3824094
-
Leu
TAG
-
¡û
>A171005478
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3819957
3819870
-
Leu
TAG
-
¡û
>A171005552
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
724075
723988
-
Leu
TAG
-
¡û
>A171005564
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
753469
753556
+
Leu
TAG
-
¡û
>A171005649
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2332282
2332195
-
Leu
TAG
-
¡û
>WENV180345504
OBLN01000397
[OBLN] sediment metagenome; sediment
10791
10878
+
Leu
TAG
[ENA]
¢þ
>WENV170008259
AMZC01006369
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
96
8
-
Leu
TAG
[ENA]
¢þ
>At1425
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5064696
5064612
-
Leu
TAG
[Ensembl]
¡û
>At1435
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
466965
467049
+
Leu
TAG
[Ensembl]
¡û
>WENV170687871
LFRM01214605
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
41546
41634
+
Leu
TAG
[ENA]
¢þ
>WENV170723176
LSQX01257633
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
30541
30456
-
Leu
TAG
[ENA]
¢þ
>WENV170784213
MCHG01000126
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
18583
18669
+
Leu
TAG
[ENA]
¢þ
>W1910230884
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
126901
126989
+
Leu
TAG
[ENA]
¡û
>W1910569256
JJOR01000130
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
4219
4304
+
Leu
TAG
[ENA]
¡û
>W1910569304
JJOS01000066
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
4238
4323
+
Leu
TAG
[ENA]
¡û
>W1910569341
JJOT01000022
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
45983
45898
-
Leu
TAG
[ENA]
¡û
>W1910569382
JJOU01000020
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
19190
19275
+
Leu
TAG
[ENA]
¡û
>W1910569472
JJOV01000087
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
21150
21064
-
Leu
TAG
[ENA]
¡û
>W1910569485
JJOW01000092
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
13869
13955
+
Leu
TAG
[ENA]
¡û
>W1910569652
JJOZ01000033
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
13869
13955
+
Leu
TAG
[ENA]
¡û
>W1910569731
JJPA01000250
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
4237
4322
+
Leu
TAG
[ENA]
¡û
>W1910569781
JJPB01000133
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
16293
16208
-
Leu
TAG
[ENA]
¡û
>W1910569916
JJPE01000094
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
16281
16196
-
Leu
TAG
[ENA]
¡û
>W1910569957
JJPF01000044
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
18971
19056
+
Leu
TAG
[ENA]
¡û
>W1910569992
JJPG01000004
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
16277
16192
-
Leu
TAG
[ENA]
¡û
>W1910570057
JJPH01000039
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
16280
16195
-
Leu
TAG
[ENA]
¡û
>W1910570094
JJPI01000012
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
4114
4199
+
Leu
TAG
[ENA]
¡û
>W1910570177
JJPJ01000074
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
3927
4012
+
Leu
TAG
[ENA]
¡û
>W1910570194
JJPK01000008
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
20751
20836
+
Leu
TAG
[ENA]
¡û
>W1910570279
JJPL01000130
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
4330
4415
+
Leu
TAG
[ENA]
¡û
>W1910570323
JJPM01000180
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
17119
17034
-
Leu
TAG
[ENA]
¡û
>W1910570393
JJPN01000156
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
19190
19275
+
Leu
TAG
[ENA]
¡û
>W1910570449
JJPP01000015
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
4241
4326
+
Leu
TAG
[ENA]
¡û
>W1910570553
JJPR01000022
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
16368
16283
-
Leu
TAG
[ENA]
¡û
>W1910570670
JJPT01000078
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
4924
5009
+
Leu
TAG
[ENA]
¡û
>W1910570740
JJPU01000168
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
14031
14116
+
Leu
TAG
[ENA]
¡û
>W1910570895
JJPX01000172
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
4123
4208
+
Leu
TAG
[ENA]
¡û
>W1910570931
JJPY01000067
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
16294
16209
-
Leu
TAG
[ENA]
¡û
>W1910570952
JJPZ01000007
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
19150
19235
+
Leu
TAG
[ENA]
¡û
>W1910571020
JJQA01000076
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
4151
4236
+
Leu
TAG
[ENA]
¡û
>W1910571070
JJQB01000040
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
6347
6432
+
Leu
TAG
[ENA]
¡û
>W1910571148
JJQC01000166
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
4146
4231
+
Leu
TAG
[ENA]
¡û
>W1910571157
JJQD01000024
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
4227
4312
+
Leu
TAG
[ENA]
¡û
>W1910571218
JJQE01000081
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
18971
19056
+
Leu
TAG
[ENA]
¡û
>W1910571257
JJQF01000032
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
4149
4234
+
Leu
TAG
[ENA]
¡û
>W1910571314
JJQG01000062
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
4361
4446
+
Leu
TAG
[ENA]
¡û
>W1910571397
JJQH01000190
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
4273
4358
+
Leu
TAG
[ENA]
¡û
>W1910571472
JJQJ01000087
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
4241
4326
+
Leu
TAG
[ENA]
¡û
>W1910571522
JJQK01000054
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
4027
4112
+
Leu
TAG
[ENA]
¡û
>W1910571573
JJQL01000015
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
65593
65679
+
Leu
TAG
[ENA]
¡û
>W1910571677
JJQM01000170
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
4219
4304
+
Leu
TAG
[ENA]
¡û
>W1910571722
JJQN01000132
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
4056
4141
+
Leu
TAG
[ENA]
¡û
>W1910571756
JJQO01000088
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
4226
4311
+
Leu
TAG
[ENA]
¡û
>W1910571822
JJQP01000160
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
572
657
+
Leu
TAG
[ENA]
¡û
>W1910571932
JJQR01000097
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
4228
4313
+
Leu
TAG
[ENA]
¡û
>W1910572086
JJQU01000138
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
4176
4261
+
Leu
TAG
[ENA]
¡û
>W1910572143
JJQV01000104
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
104071
103986
-
Leu
TAG
[ENA]
¡û
>W1910572162
JJQW01000029
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
4291
4376
+
Leu
TAG
[ENA]
¡û
>W1910572223
JJQX01000094
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
22708
22623
-
Leu
TAG
[ENA]
¡û
>W1910572288
JJQY01000147
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
133373
133459
+
Leu
TAG
[ENA]
¡û
>W1910572388
JJRA01000121
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
56005
55920
-
Leu
TAG
[ENA]
¡û
>W1910572424
JJRB01000084
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
104092
104007
-
Leu
TAG
[ENA]
¡û
>W1910575036
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
254828
254913
+
Leu
TAG
[ENA]
¡û
>W1910635259
LMVP01000445
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
5286
5199
-
Leu
TAG
[ENA]
¡û
>W1910655371
LZPK01000006
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
30840
30927
+
Leu
TAG
[ENA]
¡û
>W1910694776
MDTP02000052
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
49782
49868
+
Leu
TAG
[ENA]
¡û
>W1610000019
AAAR03000003
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
99817
99730
-
Leu
TAG
[ENA]
¡û
>W1610045109
BBBC01000046
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
4019
4104
+
Leu
TAG
[ENA]
¡û
>W1610046895
BBCW01000025
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
585
671
+
Leu
TAG
[ENA]
¡û
>W1610048615
BBEF01000069
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
16318
16405
+
Leu
TAG
[ENA]
¡û
>W1610605107
LFRP01000025
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
41546
41634
+
Leu
TAG
[ENA]
¡û
>W1610670266
LKAZ01000053
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
104217
104303
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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