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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56525 (12 seq.)
>A171007193
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
1907529
1907613
+
Leu
GAG
-
¡û
>A171007194
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
2060428
2060512
+
Leu
GAG
-
¡û
>A171007550
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
1918137
1918221
+
Leu
GAG
-
¡û
>A171007551
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
2085667
2085751
+
Leu
GAG
-
¡û
>A171007628
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
1932217
1932133
-
Leu
GAG
-
¡û
>A171007629
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
1802481
1802397
-
Leu
GAG
-
¡û
>WENV180095520
MTBK01072913
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3005
3089
+
Leu
GAG
[ENA]
¢þ
>WENV170562069
CZCB01000795
[CZCB] anaerobic digester metagenome; anaerobic digester
40254
40339
+
Leu
GAG
[ENA]
¢þ
>WENV170685445
LFRM01091679
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
29605
29520
-
Leu
GAG
[ENA]
¢þ
>W1910226953
FNFT01000003
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
247043
247128
+
Leu
GAG
[ENA]
¡û
>W1610063008
BCNX01000003
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
23963
23878
-
Pseudo
GAG
[ENA]
¡û
>W1610605050
LFRO01000023
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
29605
29520
-
Pseudo
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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