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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56527 (6 seq.)
>A171007208
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
1031676
1031592
-
Leu
CAG
-
¡û
>A171007564
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
1078483
1078399
-
Leu
CAG
-
¡û
>A171007633
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
1182092
1182008
-
Leu
CAG
-
¡û
>WENV180096616
MTBK01138746
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
15
100
+
Leu
CAG
[ENA]
¢þ
>WENV180097832
MTBK01213439
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1075
990
-
Leu
CAG
[ENA]
¢þ
>WENV170724243
LSQX01298122
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2161
2074
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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