This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56550 (18 seq.)
>W131155606
AQOS01000013
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
29999
29912
-
Leu
TAA
[ENA]
¡û
>W131160741
AQWU01000071
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
81662
81749
+
Leu
TAA
[ENA]
¡û
>W131177925
ARLD01000089
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
57815
57902
+
Leu
TAA
[ENA]
¡û
>W131218084
ATXJ01000002
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
202659
202746
+
Leu
TAA
[ENA]
¡û
>C171047235
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
317315
317228
-
Leu
TAA
-
¡û
>C025875
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
359615
359702
+
Leu
TAA
[Ensembl]
¡û
>C025929
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
688939
689026
+
Leu
TAA
[Ensembl]
¡û
>WENV180015027
FQKF010280637
[FQKF] soil metagenome; Soil
2
89
+
Leu
TAA
[ENA]
¢þ
>WENV180036589
FVAA010194451
[FVAA] soil metagenome; Soil
88
1
-
Leu
TAA
[ENA]
¢þ
>WENV181227374
OFDN01008519
[OFDN] hot springs metagenome; Water
318
405
+
Leu
TAA
[ENA]
¢þ
>WENV181404628
OGCB01000005
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
48213
48300
+
Leu
TAA
[ENA]
¢þ
>WENV181405355
OGCE01000014
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
47120
47033
-
Leu
TAA
[ENA]
¢þ
>C181003595
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
545964
545877
-
Leu
TAA
-
¡û
>W1911578803
PELL01000329
Deinococcota
Thermus scotoductus 39_S39 [PELL]
41182
41095
-
Leu
TAA
[ENA]
¡û
>W1911579062
PELQ01000347
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
4639
4552
-
Leu
TAA
[ENA]
¡û
>C121009751
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1225224
1225137
-
Leu
TAA
[Ensembl]
¡û
>C161067108
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1292015
1291928
-
Leu
TAA
[Ensembl]
¡û
>W121056036
AIJQ01000005
Deinococcota
Thermus parvatiensis RL [AIJQ]
60270
60357
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK