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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56620 (33 seq.)
>W1711232892
LYBM01000002
Gammaproteobacteria
Veronia pacifica pacificus [LYBM]
285979
286066
+
Ser
GGA
[ENA]
¡û
>W1711934423
NAJR01000005
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
263612
263699
+
Ser
GGA
[ENA]
¡û
>W1712080475
NGZL01000076
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
7073
7160
+
Ser
GGA
[ENA]
¡û
>WENV013232
AACY020363530
Marine microbial communities from Global Ocean Sampling (GOS)
1757
1846
+
Ser
GGA
[ENA]
>WENV013595
AACY020374141
Marine microbial communities from Global Ocean Sampling (GOS)
50977
50888
-
Ser
GGA
[ENA]
>C020628
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
2239902
2239989
+
Ser
GGA
[Ensembl]
¡û
>C022251
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
2118528
2118615
+
Ser
GGA
[Ensembl]
¡û
>C022353
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1999543
1999630
+
Ser
GGA
[Ensembl]
¡û
>C022449
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
2080710
2080797
+
Ser
GGA
[Ensembl]
¡û
>C022938
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
2235124
2235211
+
Ser
GGA
[Ensembl]
¡û
>w026302
ABAU01000033
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
38252
38163
-
Ser
GGA
[ENA]
¡û
>W141171242
AXZL01000072
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
106456
106543
+
Ser
GGA
[ENA]
¡û
>C08008727
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
2343061
2343148
+
Ser
GGA
[Ensembl]
¡û
>WENV020969
AACY020561247
Marine microbial communities from Global Ocean Sampling (GOS)
15035
14946
-
Ser
GGA
[ENA]
>C181057599
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
1327790
1327703
-
Ser
GGA
-
¡û
>C181063020
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
2701500
2701413
-
Ser
GGA
-
¡û
>W141520062
JGVI01000053
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
33104
33191
+
Ser
GGA
[ENA]
¡û
>W09103926
AALB01000027
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
41481
41394
-
Ser
GGA
[ENA]
¡û
>W09104022
AALH01000005
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
145116
145029
-
Ser
GGA
[ENA]
¡û
>W09104593
AALX01000016
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
72116
72029
-
Ser
GGA
[ENA]
¡û
>C191205251
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
4319998
4320085
+
Ser
GGA
-
¡û
>W1910913746
NHRI01000003
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
81524
81611
+
Ser
GGA
[ENA]
¡û
>W1911551677
OXJV01000016
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
177370
177283
-
Ser
GGA
[ENA]
¡û
>W1911710047
QPQT01000006
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
108580
108493
-
Ser
GGA
[ENA]
¡û
>W1810073404
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
3972492
3972405
-
Ser
GGA
[ENA]
¡û
>W1810587736
QFLG01000016
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
93310
93397
+
Ser
GGA
[ENA]
¡û
>W1511403543
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
3769301
3769388
+
Ser
GGA
[ENA]
¡û
>W11169893
AFOZ01000022
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
105226
105139
-
Ser
GGA
[ENA]
¡û
>W121103299
AKZL01000003
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
6260
6173
-
Ser
GGA
[ENA]
¡û
>W1610617832
LGYY01000060
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
56369
56456
+
Ser
GGA
[ENA]
¡û
>W1710692454
JZWJ01000071
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
34328
34415
+
Ser
GGA
[ENA]
¡û
>W1710706666
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
4541680
4541593
-
Ser
GGA
[ENA]
¡û
>W1710744007
LGYY01000060
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
56369
56456
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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