This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56718 (83 seq.)
>W131011314
AIIM01000006
Bacillota
Enterococcus faecalis B56765 [AIIM]
664817
664731
-
Lys
TTT
[ENA]
¡û
>W131012400
AIJH01000002
Bacillota
Enterococcus faecalis B1290 [AIJH]
345835
345921
+
Lys
TTT
[ENA]
¡û
>W131013129
AIPX01000016
Bacillota
Enterococcus faecalis B1532 [AIPX]
345835
345921
+
Lys
TTT
[ENA]
¡û
>W131013423
AIQC01000011
Bacillota
Enterococcus faecalis B1696 [AIQC]
396970
397056
+
Lys
TTT
[ENA]
¡û
>W131014003
AIQN01000010
Bacillota
Enterococcus faecalis B2255 [AIQN]
396743
396829
+
Lys
TTT
[ENA]
¡û
>W131014107
AIQP01000013
Bacillota
Enterococcus faecalis B2391 [AIQP]
397288
397374
+
Lys
TTT
[ENA]
¡û
>W131014282
AIQS01000016
Bacillota
Enterococcus faecalis B2557 [AIQS]
345892
345978
+
Lys
TTT
[ENA]
¡û
>W131015047
AIRG01000016
Bacillota
Enterococcus faecalis B3126 [AIRG]
345835
345921
+
Lys
TTT
[ENA]
¡û
>W131015335
AIRL01000029
Bacillota
Enterococcus faecalis B4018 [AIRL]
345856
345942
+
Lys
TTT
[ENA]
¡û
>W131015813
AIRU01000014
Bacillota
Enterococcus faecalis B4672 [AIRU]
345835
345921
+
Lys
TTT
[ENA]
¡û
>W131015860
AIRV01000014
Bacillota
Enterococcus faecalis B4674 [AIRV]
345856
345942
+
Lys
TTT
[ENA]
¡û
>W131016258
AISD01000018
Bacillota
Enterococcus faecalis UAA823 [AISD]
110811
110897
+
Lys
TTT
[ENA]
¡û
>W131027293
AJAG01000020
Bacillota
Enterococcus faecalis UAA1489 [AJAG]
394597
394683
+
Lys
TTT
[ENA]
¡û
>W131028278
AJBA01000009
Bacillota
Enterococcus faecalis FA2-2 [AJBA]
395298
395384
+
Lys
TTT
[ENA]
¡û
>W131028441
AJBD01000008
Bacillota
Enterococcus faecalis RM4679 [AJBD]
369048
369134
+
Lys
TTT
[ENA]
¡û
>W131028606
AJBG01000019
Bacillota
Enterococcus faecalis WH257 [AJBG]
370066
370152
+
Lys
TTT
[ENA]
¡û
>W131028781
AJBJ01000014
Bacillota
Enterococcus faecalis WH571 [AJBJ]
370433
370519
+
Lys
TTT
[ENA]
¡û
>W131031500
AJDH01000006
Bacillota
Enterococcus faecalis UAA409 [AJDH]
420002
420088
+
Lys
TTT
[ENA]
¡û
>W131032458
AJDY01000019
Bacillota
Enterococcus faecalis HH22 [AJDY]
347366
347452
+
Lys
TTT
[ENA]
¡û
>W131032847
AJEF01000014
Bacillota
Enterococcus faecalis TX0635 = WH245 [AJEF]
370826
370912
+
Lys
TTT
[ENA]
¡û
>W131189399
ASDN01000015
Bacillota
Enterococcus faecalis RMC1 [ASDN]
392132
392218
+
Lys
TTT
[ENA]
¡û
>W131189965
ASDY01000013
Bacillota
Enterococcus faecalis D173 [ASDY]
393672
393758
+
Lys
TTT
[ENA]
¡û
>W131190224
ASED01000009
Bacillota
Enterococcus faecalis SF21520 [ASED]
390419
390505
+
Lys
TTT
[ENA]
¡û
>W1711232992
LYBN01000012
Bacillota
Enterococcus faecalis [LYBN]
41669
41583
-
Lys
TTT
[ENA]
¡û
>W1711460639
MJEK01000012
Bacillota
Enterococcus faecalis [MJEK]
433841
433755
-
Lys
TTT
[ENA]
¡û
>W1711705238
MSQG01000015
Bacillota
Enterococcus faecalis [MSQG]
1233
1319
+
Lys
TTT
[ENA]
¡û
>W1711771976
MVGQ01000017
Bacillota
Enterococcus faecalis [MVGQ]
2646
2732
+
Lys
TTT
[ENA]
¡û
>W1711943224
NBDS01000043
Bacillota
Enterococcus faecalis [NBDS]
121963
122049
+
Lys
TTT
[ENA]
¡û
>W1711943294
NBDT01000112
Bacillota
Enterococcus faecalis [NBDT]
12731
12817
+
Lys
TTT
[ENA]
¡û
>W1711943307
NBDU01000009
Bacillota
Enterococcus faecalis [NBDU]
30548
30462
-
Lys
TTT
[ENA]
¡û
>W1712070015
NGMU01000001
Bacillota
Enterococcus faecalis [NGMU]
406207
406293
+
Lys
TTT
[ENA]
¡û
>W1712109910
NJFO01000003
Bacillota
Enterococcus faecalis [NJFO]
1205476
1205390
-
Lys
TTT
[ENA]
¡û
>WENV180128496
OATB01000208
[OATB] human gut metagenome; faeces
52842
52756
-
Lys
TTT
[ENA]
¢þ
>WENV180158184
OAUY01001271
[OAUY] human gut metagenome; faeces
2025
1939
-
Lys
TTT
[ENA]
¢þ
>WENV180185428
OAWT01000076
[OAWT] human gut metagenome; faeces
89
175
+
Lys
TTT
[ENA]
¢þ
>WENV180194854
OAZY01000212
[OAZY] human gut metagenome; faeces
5179
5265
+
Lys
TTT
[ENA]
¢þ
>WENV180312322
OBJX01000732
[OBJX] human gut metagenome; fecal sample
907
993
+
Lys
TTT
[ENA]
¢þ
>WENV180405980
OBUN01001563
[OBUN] human gut metagenome; faeces
1713
1627
-
Lys
TTT
[ENA]
¢þ
>W141158710
AXOI01000007
Bacillota
Enterococcus faecalis JH2-2 [AXOI]
397429
397515
+
Lys
TTT
[ENA]
¡û
>W141203274
AZIA01000363
Bacillota
Enterococcus faecalis PF3 [AZIA]
1562
1648
+
Lys
TTT
[ENA]
¡û
>WENV182827428
OKCZ01000185
[OKCZ] human gut metagenome; human gut
1575
1489
-
Lys
TTT
[ENA]
¢þ
>WENV182855843
OKNF01000008
[OKNF] human gut metagenome; human gut
1797
1711
-
Lys
TTT
[ENA]
¢þ
>C181181760
CP029612
Bacillota
Enterococcus faecalis H25 [CP029612]
1368321
1368407
+
Lys
TTT
-
¡û
>C191003258
AP018538
Bacillota
Enterococcus faecalis KUB3006 [AP018538]
1265337
1265423
+
Lys
TTT
-
¡û
>C191003320
AP018543
Bacillota
Enterococcus faecalis KUB3007 [AP018543]
1262269
1262355
+
Lys
TTT
-
¡û
>C191062129
CP028835
Bacillota
Enterococcus faecalis FC [CP028835]
1424587
1424673
+
Lys
TTT
-
¡û
>C191185269
CP041012
Bacillota
Enterococcus faecalis FDAARGOS_611 [CP041012]
1830351
1830265
-
Lys
TTT
-
¡û
>W09115801
ACAR01000091
Bacillota
Enterococcus faecalis Fly1 [ACAR]
51329
51243
-
Lys
TTT
[ENA]
¡û
>W09125904
ACIX01000034
Bacillota
Enterococcus faecalis HH22 [ACIX]
19010
19096
+
Lys
TTT
[ENA]
¡û
>W1910181361
BJLX01000034
Bacillota
Enterococcus faecalis NBRC 3971 [BJLX]
5953
6039
+
Lys
TTT
[ENA]
¡û
>W1910231654
FPEB01000010
Bacillota
Enterococcus faecalis ATCC 29212 G881 [FPEB]
3337
3251
-
Lys
TTT
[ENA]
¡û
>W1910605928
LEPG01000002
Bacillota
Enterococcus faecalis 210AEA1 [LEPG]
357570
357656
+
Lys
TTT
[ENA]
¡û
>W1910606073
LEPJ01000002
Bacillota
Enterococcus faecalis 236EA1 [LEPJ]
349264
349350
+
Lys
TTT
[ENA]
¡û
>W1910606689
LEPT01000003
Bacillota
Enterococcus faecalis 300AEA1 [LEPT]
426426
426512
+
Lys
TTT
[ENA]
¡û
>W1910606947
LEPX01000003
Bacillota
Enterococcus faecalis 315EA1 [LEPX]
347087
347173
+
Lys
TTT
[ENA]
¡û
>W1910606979
LEPY01000002
Bacillota
Enterococcus faecalis 34EA1 [LEPY]
192841
192927
+
Lys
TTT
[ENA]
¡û
>W1910612152
LGBT01000001
Bacillota
Enterococcus faecalis C6 [LGBT]
352757
352843
+
Lys
TTT
[ENA]
¡û
>W1911696952
QNGG01000004
Bacillota
Enterococcus faecalis 6888 [QNGG]
2844
2930
+
Lys
TTT
[ENA]
¡û
>W1911697061
QNGI01000002
Bacillota
Enterococcus faecalis 10938 [QNGI]
375400
375486
+
Lys
TTT
[ENA]
¡û
>W1911712735
QPTR01000001
Bacillota
Enterococcus faecalis AR01-1155 [QPTR]
213947
213861
-
Lys
TTT
[ENA]
¡û
>W1810078311
PEJW02000001
Bacillota
Enterococcus faecalis ET116_16 [PEJW]
340693
340607
-
Lys
TTT
[ENA]
¡û
>W1810313217
PTVU01000047
Bacillota
Enterococcus faecalis CVM N60392F [PTVU]
2893
2979
+
Lys
TTT
[ENA]
¡û
>W1810316098
PTYA01000009
Bacillota
Enterococcus faecalis CVM N52734 [PTYA]
29666
29580
-
Lys
TTT
[ENA]
¡û
>W1810318986
PUAB01000025
Bacillota
Enterococcus faecalis CVM N54588 [PUAB]
29650
29564
-
Lys
TTT
[ENA]
¡û
>W1810320512
PUBE01000008
Bacillota
Enterococcus faecalis CVM N52724 [PUBE]
72316
72402
+
Lys
TTT
[ENA]
¡û
>W1810463211
PZZJ01000002
Bacillota
Enterococcus faecalis B3286 [PZZJ]
1396664
1396750
+
Lys
TTT
[ENA]
¡û
>W10111642
ADDQ01000006
Bacillota
Enterococcus faecalis R712 [ADDQ]
53786
53700
-
Lys
TTT
[ENA]
¡û
>W10124323
AEBB01000028
Bacillota
Enterococcus faecalis TX4000 [AEBB]
17398
17312
-
Lys
TTT
[ENA]
¡û
>W10124429
AEBE01000008
Bacillota
Enterococcus faecalis TX0630 [AEBE]
28007
27921
-
Lys
TTT
[ENA]
¡û
>W10124944
AEBP01000002
Bacillota
Enterococcus faecalis TX0017 [AEBP]
166108
166194
+
Lys
TTT
[ENA]
¡û
>W10125410
AEBZ01000030
Bacillota
Enterococcus faecalis TX0635 [AEBZ]
11176
11262
+
Lys
TTT
[ENA]
¡û
>W10125491
AECA01000058
Bacillota
Enterococcus faecalis TX0411 [AECA]
193311
193397
+
Lys
TTT
[ENA]
¡û
>W11114569
ADDQ01000006
Bacillota
Enterococcus faecalis R712 [ADDQ]
53786
53700
-
Lys
TTT
[ENA]
¡û
>W1511446475
JUXC01000090
Bacillota
Enterococcus faecalis 687_EFLS [JUXC]
1366
1452
+
Lys
TTT
[ENA]
¡û
>W1511470773
JVXC01000133
Bacillota
Enterococcus faecalis 1248_EFLS [JVXC]
31118
31032
-
Lys
TTT
[ENA]
¡û
>W11131210
AEBB01000028
Bacillota
Enterococcus faecalis TX4000 [AEBB]
17398
17312
-
Lys
TTT
[ENA]
¡û
>W11131316
AEBE01000008
Bacillota
Enterococcus faecalis TX0630 [AEBE]
28007
27921
-
Lys
TTT
[ENA]
¡û
>W11131831
AEBP01000002
Bacillota
Enterococcus faecalis TX0017 [AEBP]
166108
166194
+
Lys
TTT
[ENA]
¡û
>W11132297
AEBZ01000030
Bacillota
Enterococcus faecalis TX0635 [AEBZ]
11176
11262
+
Lys
TTT
[ENA]
¡û
>W11132378
AECA01000058
Bacillota
Enterococcus faecalis TX0411 [AECA]
193311
193397
+
Lys
TTT
[ENA]
¡û
>W1610082873
CAWH010000072
Bacillota
Enterococcus faecalis JH2-2 [CAWH]
6094
6180
+
Lys
TTT
[ENA]
¡û
>W1611014000
LYBN01000012
Bacillota
Enterococcus faecalis [LYBN]
41669
41583
-
Lys
TTT
[ENA]
¡û
>W1710088101
CAWH010000072
Bacillota
Enterococcus faecalis JH2-2 [CAWH]
6094
6180
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK