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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56897 (37 seq.)
>W1711144476
LVIE01000190
Gammaproteobacteria
Providencia stuartii [LVIE]
211646
211733
+
Ser
TGA
[ENA]
¡û
>W1711233534
LYBX01000008
Gammaproteobacteria
Providencia rettgeri [LYBX]
409797
409884
+
Ser
TGA
[ENA]
¡û
>W1711233551
LYBX01000010
Gammaproteobacteria
Providencia rettgeri [LYBX]
876166
876253
+
Ser
TGA
[ENA]
¡û
>C171065778
CP017671
Gammaproteobacteria
Providencia rettgeri RB151 [CP017671]
2847066
2846979
-
Ser
TGA
-
¡û
>W141022177
AJSB01000007
Gammaproteobacteria
Providencia rettgeri Dmel1 [AJSB]
194629
194542
-
Ser
TGA
[ENA]
¡û
>W141024358
AKKM01000005
Gammaproteobacteria
Providencia alcalifaciens Dmel2 [AKKM]
424119
424206
+
Ser
TGA
[ENA]
¡û
>W141221483
AZYZ01000036
Gammaproteobacteria
Providencia alcalifaciens PAL-3 [AZYZ]
89138
89225
+
Ser
TGA
[ENA]
¡û
>WENV182621581
OJKJ01000110
[OJKJ] metagenome; faeces
17301
17214
-
Ser
TGA
[ENA]
¢þ
>W141275250
JACS01000013
Gammaproteobacteria
Providencia alcalifaciens F90-2004 [JACS]
121074
121161
+
Ser
TGA
[ENA]
¡û
>W141283215
JAKZ01000049
Gammaproteobacteria
Providencia alcalifaciens PAL-2 [JAKZ]
121132
121219
+
Ser
TGA
[ENA]
¡û
>W141283244
JALA01000004
Gammaproteobacteria
Providencia alcalifaciens PAL-1 [JALA]
236723
236810
+
Ser
TGA
[ENA]
¡û
>W141283339
JALB01000031
Gammaproteobacteria
Providencia alcalifaciens RIMD 1656011 [JALB]
121198
121285
+
Ser
TGA
[ENA]
¡û
>W141283384
JALC01000017
Gammaproteobacteria
Providencia alcalifaciens R90-1475 [JALC]
647701
647614
-
Ser
TGA
[ENA]
¡û
>W141283442
JALD01000039
Gammaproteobacteria
Providencia alcalifaciens 205/92 [JALD]
27976
28063
+
Ser
TGA
[ENA]
¡û
>WENV170657198
JTFO01100592
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
223
310
+
Ser
TGA
[ENA]
¢þ
>C181084060
CP023536
Gammaproteobacteria
Providencia alcalifaciens FDAARGOS_408 [CP023536]
2580606
2580693
+
Ser
TGA
-
¡û
>C181152648
CP027418
Gammaproteobacteria
Providencia rettgeri FDAARGOS_330 [CP027418]
4076603
4076516
-
Ser
TGA
-
¡û
>C181184456
CP029736
Gammaproteobacteria
Providencia rettgeri AR_0082 [CP029736]
3208451
3208364
-
Ser
TGA
-
¡û
>C181195822
CP031123
Gammaproteobacteria
Providencia huaxiensis WCHPr000369 [CP031123]
350770
350857
+
Ser
TGA
-
¡û
>C181215372
LS483467
Gammaproteobacteria
Providencia alcalifaciens NCTC10286 [LS483467]
2550093
2550006
-
Ser
TGA
-
¡û
>W09112437
ABXV01000054
Gammaproteobacteria
Providencia rustigianii DSM 4541 [ABXV]
100978
101065
+
Ser
TGA
[ENA]
¡û
>W09112498
ABXW01000062
Gammaproteobacteria
Providencia alcalifaciens DSM 30120 [ABXW]
135191
135278
+
Ser
TGA
[ENA]
¡û
>C191171995
CP039844
Gammaproteobacteria
Providencia rettgeri Pr-15-2-50 [CP039844]
2043598
2043685
+
Ser
TGA
-
¡û
>C191199220
LR134189
Gammaproteobacteria
Providencia rustigianii NCTC6933 [LR134189]
2302069
2301982
-
Ser
TGA
-
¡û
>W09117709
ACCI01000126
Gammaproteobacteria
Providencia rettgeri DSM 1131 [ACCI]
28665
28578
-
Ser
TGA
[ENA]
¡û
>C191210630
LR134396
Gammaproteobacteria
Providencia rustigianii NCTC8113 [LR134396]
2363694
2363607
-
Ser
TGA
-
¡û
>W1911137362
NOWC01000022
Gammaproteobacteria
Providencia rettgeri PR1 [NOWC]
55112
55199
+
Ser
TGA
[ENA]
¡û
>W1911429440
NXKD01000020
Gammaproteobacteria
Providencia rettgeri PR002 [NXKD]
54967
55054
+
Ser
TGA
[ENA]
¡û
>W1911744546
QVPC01000002
Gammaproteobacteria
Providencia rettgeri DCX [QVPC]
898322
898235
-
Ser
TGA
[ENA]
¡û
>W1810014966
BGMI01000002
Gammaproteobacteria
Providencia rettgeri TUM9994 [BGMI]
398269
398356
+
Ser
TGA
[ENA]
¡û
>W1810376691
PXIC01000004
Gammaproteobacteria
Providencia alcalifaciens PRM-2 [PXIC]
231404
231491
+
Ser
TGA
[ENA]
¡û
>W1810678922
QKNQ01000001
Gammaproteobacteria
Providencia rettgeri Pret_2032 [QKNQ]
2429809
2429722
-
Ser
TGA
[ENA]
¡û
>W1810869938
QUAF01000002
Gammaproteobacteria
Providencia rettgeri NVIT03 [QUAF]
424763
424676
-
Ser
TGA
[ENA]
¡û
>W1510642727
CVLT01000042
Gammaproteobacteria
Providencia rettgeri H1736 [CVLT]
41330
41243
-
Ser
TGA
[ENA]
¡û
>W1511365745
JSEQ01000002
Gammaproteobacteria
Providencia rettgeri CCBH11880 [JSEQ]
29686
29599
-
Ser
TGA
[ENA]
¡û
>W1611014087
LYBX01000008
Gammaproteobacteria
Providencia rettgeri [LYBX]
409797
409884
+
Ser
TGA
[ENA]
¡û
>W1611014104
LYBX01000010
Gammaproteobacteria
Providencia rettgeri [LYBX]
876166
876253
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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