This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5702 (120 seq.)
>W131144793
AQFR01000178
Bacillota
Lactobacillus intestinalis ASF360 [AQFR]
32081
31989
-
Ser
GGA
[ENA]
¡û
>W1711083931
LSVI01000321
Bacillota
Lactobacillus helveticus [LSVI]
4906
4814
-
Ser
GGA
[ENA]
¡û
>W1711083940
LSVJ01000007
Bacillota
Lactobacillus helveticus [LSVJ]
110
202
+
Ser
GGA
[ENA]
¡û
>W1711632547
MPSU01000012
Bacillota
Lactobacillus helveticus [MPSU]
42907
42999
+
Ser
GGA
[ENA]
¡û
>W1712041340
NFKZ01000025
Bacillota
Lactobacillus gallinarum [NFKZ]
128
220
+
Ser
GGA
[ENA]
¡û
>W1712042251
NFLP01000016
Bacillota
Lactobacillus gallinarum [NFLP]
128
220
+
Ser
GGA
[ENA]
¡û
>W1712042411
NFLS01000027
Bacillota
Lactobacillus gallinarum [NFLS]
25948
25856
-
Ser
GGA
[ENA]
¡û
>W1712042802
NFLZ01000026
Bacillota
Lactobacillus gallinarum [NFLZ]
118
210
+
Ser
GGA
[ENA]
¡û
>C171051880
CP016827
Bacillota
Lactobacillus helveticus D76 [CP016827]
979918
979826
-
Ser
GGA
-
¡û
>C171102964
CP020029
Bacillota
Lactobacillus helveticus D75 [CP020029]
1599804
1599712
-
Ser
GGA
-
¡û
>WENV180340837
OBLI01049512
[OBLI] pig gut metagenome; faeces
1281
1189
-
Ser
GGA
[ENA]
¢þ
>WENV181197157
OERA01000394
[OERA] metagenome; Caecal content
364
272
-
Ser
GGA
[ENA]
¢þ
>WENV181891578
OGXO01038943
[OGXO] human gut metagenome; faeces
608
700
+
Ser
GGA
[ENA]
¢þ
>W141227517
BALB01000034
Bacillota
Lactobacillus gallinarum JCM 2011 [BALB]
9
101
+
Ser
GGA
[ENA]
¡û
>W141228255
BALU01000011
Bacillota
Lactobacillus kitasatonis JCM 1039 [BALU]
10
102
+
Ser
GGA
[ENA]
¡û
>W141228942
BAMG01000072
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens JCM 6985 [BAMG]
4302
4210
-
Ser
GGA
[ENA]
¡û
>W141244148
CAKC01000085
Bacillota
Lactobacillus gigeriorum CRBIP 24.85 [CAKC]
100
192
+
Ser
GGA
[ENA]
¡û
>C08006141
CP000517
Bacillota
Lactobacillus helveticus DPC 4571 [CP000517]
1694003
1693911
-
Ser
GGA
[Ensembl]
¡û
>W141255446
CBUH010000186
Bacillota
Lactobacillus helveticus CIRM-BIA 953 [CBUH]
3292
3384
+
Ser
GGA
[ENA]
¡û
>W141255529
CBUK010000019
Bacillota
Lactobacillus helveticus CIRM-BIA 951 [CBUK]
15532
15440
-
Ser
GGA
[ENA]
¡û
>W141255607
CBUL010000068
Bacillota
Lactobacillus helveticus CIRM-BIA 104 [CBUL]
5026
4934
-
Ser
GGA
[ENA]
¡û
>W141255649
CBUM010000072
Bacillota
Lactobacillus helveticus CIRM-BIA 103 [CBUM]
5045
4953
-
Ser
GGA
[ENA]
¡û
>W141255695
CBUN010000004
Bacillota
Lactobacillus helveticus CIRM-BIA 101 [CBUN]
5281
5189
-
Ser
GGA
[ENA]
¡û
>WENV183151057
OLOP01024734
[OLOP] human gut metagenome; faeces
1388
1296
-
Ser
GGA
[ENA]
¢þ
>WENV183182883
OLPK01002115
[OLPK] human gut metagenome; faeces
65
157
+
Ser
GGA
[ENA]
¢þ
>WENV183238288
OLQY01019410
[OLQY] human gut metagenome; faeces
65
157
+
Ser
GGA
[ENA]
¢þ
>WENV183263918
OLRR01002470
[OLRR] human gut metagenome; faeces
9877
9785
-
Ser
GGA
[ENA]
¢þ
>WENV183606081
OODN01000392
[OODN] human gut metagenome; human gut
27419
27327
-
Ser
GGA
[ENA]
¢þ
>C181012371
CP012389
Bacillota
Lactobacillus amylovorus JBD401 [CP012389]
1678015
1677923
-
Ser
GGA
-
¡û
>C181017321
CP015444
Bacillota
Lactobacillus helveticus FAM8627 [CP015444]
1380221
1380129
-
Ser
GGA
-
¡û
>C181017459
CP015496
Bacillota
Lactobacillus helveticus FAM8105 [CP015496]
465990
466082
+
Ser
GGA
-
¡û
>C181017521
CP015498
Bacillota
Lactobacillus helveticus FAM22155 [CP015498]
496986
497078
+
Ser
GGA
-
¡û
>C181027695
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
656542
656450
-
Ser
GGA
-
¡û
>C191014838
CP017982
Bacillota
Lactobacillus helveticus LH99 [CP017982]
440763
440855
+
Ser
GGA
-
¡û
>C191016305
CP019581
Bacillota
Lactobacillus helveticus LH5 [CP019581]
1962146
1962238
+
Ser
GGA
-
¡û
>C191073274
CP031016
Bacillota
Lactobacillus helveticus [CP031016]
495372
495464
+
Ser
GGA
-
¡û
>C191073342
CP031018
Bacillota
Lactobacillus helveticus [CP031018]
498635
498727
+
Ser
GGA
-
¡û
>C191138846
CP035307
Bacillota
Lactobacillus helveticus IDCC3801 [CP035307]
1511154
1511062
-
Ser
GGA
-
¡û
>W09123221
ACGU01000017
Bacillota
Lactobacillus ultunensis DSM 16047 [ACGU]
25083
24991
-
Ser
GGA
[ENA]
¡û
>W09127597
ACLD01000024
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
10
102
+
Ser
GGA
[ENA]
¡û
>W09128114
ACLM01000201
Bacillota
Lactobacillus helveticus DSM 20075 [ACLM]
4787
4695
-
Ser
GGA
[ENA]
¡û
>W1910871278
NCWZ01000024
Bacillota
Lactobacillus kefiranofaciens KR [NCWZ]
27952
27860
-
Ser
GGA
[ENA]
¡û
>W1910922997
NIGM01000146
Bacillota
Lactobacillus helveticus M92 [NIGM]
5109
5017
-
Ser
GGA
[ENA]
¡û
>W1910923363
NIGX01000021
Bacillota
Lactobacillus helveticus LMG S-29187 [NIGX]
4922
4830
-
Ser
GGA
[ENA]
¡û
>W1911218682
NRQX01000117
Bacillota
Lactobacillus helveticus UC1156 [NRQX]
108
200
+
Ser
GGA
[ENA]
¡û
>W1911531937
OGTV01000044
Bacillota
Lactobacillus helveticus [OGTV]
5143
5051
-
Ser
GGA
[ENA]
¡û
>W1911531992
OGTV02000044
Bacillota
Lactobacillus helveticus [OGTV]
5143
5051
-
Ser
GGA
[ENA]
¡û
>W1911569426
PCYT01000186
Bacillota
Lactobacillus sp. UMNPBX17 [PCYT]
258
166
-
Ser
GGA
[ENA]
¡û
>W1911569585
PCYW01000056
Bacillota
Lactobacillus sp. UMNPBX14 [PCYW]
150
242
+
Ser
GGA
[ENA]
¡û
>W1911569983
PCZD01000055
Bacillota
Lactobacillus sp. UMNPBX6 [PCZD]
150
242
+
Ser
GGA
[ENA]
¡û
>W1911570074
PCZF01000040
Bacillota
Lactobacillus sp. UMNPBX4 [PCZF]
14307
14215
-
Ser
GGA
[ENA]
¡û
>W1911632263
PUFQ01000021
Bacillota
Lactobacillus pasteurii DSM 23907 [PUFQ]
3262
3354
+
Ser
GGA
[ENA]
¡û
>W1911702146
QNXC01000115
Bacillota
Lactobacillus helveticus TJA10 [QNXC]
4888
4796
-
Ser
GGA
[ENA]
¡û
>W1810177282
PJRL01000023
Bacillota
Lactobacillus helveticus ATCC 12046 [PJRL]
145596
145504
-
Ser
GGA
[ENA]
¡û
>W1810473205
QAHI01000031
Bacillota
Lactobacillus helveticus DS21_8 [QAHI]
230
322
+
Ser
GGA
[ENA]
¡û
>W1810473268
QAHJ01000034
Bacillota
Lactobacillus helveticus DS12_8 [QAHJ]
230
322
+
Ser
GGA
[ENA]
¡û
>W1810489044
QAZT01000037
Bacillota
Lactobacillus helveticus DS18_8 [QAZT]
230
322
+
Ser
GGA
[ENA]
¡û
>W1810489104
QAZU01000035
Bacillota
Lactobacillus helveticus DS3_8 [QAZU]
230
322
+
Ser
GGA
[ENA]
¡û
>W1810665821
QJOG01000010
Bacillota
Lactobacillus helveticus FAM22157 [QJOG]
19186
19094
-
Ser
GGA
[ENA]
¡û
>W1810665906
QJOH01000100
Bacillota
Lactobacillus helveticus FAM22076 [QJOH]
5141
5049
-
Ser
GGA
[ENA]
¡û
>W1810665944
QJOI01000043
Bacillota
Lactobacillus helveticus FAM13019 [QJOI]
15897
15805
-
Ser
GGA
[ENA]
¡û
>W1810666039
QJOJ01000097
Bacillota
Lactobacillus helveticus FAM1450 [QJOJ]
6227
6135
-
Ser
GGA
[ENA]
¡û
>W1810666099
QJOK01000048
Bacillota
Lactobacillus helveticus FAM1213 [QJOK]
222
314
+
Ser
GGA
[ENA]
¡û
>W1810666145
QJOL01000110
Bacillota
Lactobacillus helveticus FAM1182 [QJOL]
4904
4812
-
Ser
GGA
[ENA]
¡û
>W1810666171
QJOM01000001
Bacillota
Lactobacillus helveticus FAM23285 [QJOM]
117636
117544
-
Ser
GGA
[ENA]
¡û
>W1810666233
QJON01000001
Bacillota
Lactobacillus helveticus FAM19191 [QJON]
136433
136341
-
Ser
GGA
[ENA]
¡û
>W1810666296
QJOO01000001
Bacillota
Lactobacillus helveticus FAM19188 [QJOO]
136433
136341
-
Ser
GGA
[ENA]
¡û
>W1810666416
QJOQ01000001
Bacillota
Lactobacillus helveticus FAM8102 [QJOQ]
117636
117544
-
Ser
GGA
[ENA]
¡û
>W1810666479
QJOR01000001
Bacillota
Lactobacillus helveticus FAM14275 [QJOR]
183721
183629
-
Ser
GGA
[ENA]
¡û
>W1810666540
QJOS01000001
Bacillota
Lactobacillus helveticus FAM8106 [QJOS]
117734
117642
-
Ser
GGA
[ENA]
¡û
>W1810679582
QKQX01000031
Bacillota
Lactobacillus helveticus FAM21493 [QKQX]
20324
20232
-
Ser
GGA
[ENA]
¡û
>W1810815322
QSAX01000026
Bacillota
Lactobacillus amylovorus AF08-3 [QSAX]
5584
5676
+
Ser
GGA
[ENA]
¡û
>C151003274
AP014808
Bacillota
Lactobacillus acetotolerans NBRC 13120 [AP014808]
496143
496236
+
Ser
GGA
[Ensembl]
¡û
>C151003433
CP002427
Bacillota
Lactobacillus helveticus H9 [CP002427]
1526197
1526105
-
Ser
GGA
[Ensembl]
¡û
>C151061710
CP009907
Bacillota
Lactobacillus helveticus KLDS1.8701 [CP009907]
657805
657897
+
Ser
GGA
[Ensembl]
¡û
>C151081867
CP011386
Bacillota
Lactobacillus helveticus MB2-1 [CP011386]
1756253
1756161
-
Ser
GGA
[Ensembl]
¡û
>W1510072911
CDLD01000036
Bacillota
Lactobacillus sp. OTU4228 sp. [CDLD]
43622
43530
-
Ser
GGA
[ENA]
¡û
>C11111958
CP002559
Bacillota
Lactobacillus amylovorus 30SC [CP002559]
1709375
1709283
-
Ser
GGA
[Ensembl]
¡û
>C11112054
CP002609
Bacillota
Lactobacillus amylovorus GRL1118 [CP002609]
1589425
1589333
-
Ser
GGA
[Ensembl]
¡û
>C11112113
CP002338
Bacillota
Lactobacillus amylovorus GRL 1112 [CP002338]
1740607
1740515
-
Ser
GGA
[Ensembl]
¡û
>C11112894
CP002429
Bacillota
Lactobacillus helveticus H10 [CP002429]
451016
451108
+
Ser
GGA
[Ensembl]
¡û
>C11112999
CP002764
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens ZW3 [CP002764]
147400
147492
+
Ser
GGA
[Ensembl]
¡û
>W1511354484
JRQG01000155
Bacillota
Lactobacillus helveticus ATCC 10386 [JRQG]
4874
4782
-
Ser
GGA
[ENA]
¡û
>W1511355794
JRTS01000150
Bacillota
Lactobacillus helveticus M3 [JRTS]
4872
4780
-
Ser
GGA
[ENA]
¡û
>W11138534
AEIR01000004
Bacillota
Lactobacillus helveticus R0052 [AEIR]
228506
228414
-
Ser
GGA
[ENA]
¡û
>W1511580703
LARO01000042
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
193
285
+
Ser
GGA
[ENA]
¡û
>W11152514
AEYL01000163
Bacillota
Lactobacillus helveticus MTCC 5463 [AEYL]
10497
10405
-
Ser
GGA
[ENA]
¡û
>C161041486
CP012381
Bacillota
Lactobacillus helveticus CAUH18 [CP012381]
464567
464659
+
Ser
GGA
-
¡û
>C161047023
CP012890
Bacillota
Lactobacillus gallinarum HFD4 [CP012890]
77971
77879
-
Ser
GGA
[Ensembl]
¡û
>W1610031779
AYZC01000015
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
31706
31614
-
Ser
GGA
[ENA]
¡û
>W1610032370
AYZO01000039
Bacillota
Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85 [AYZO]
45
137
+
Ser
GGA
[ENA]
¡û
>W1610032853
AZCM01000070
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
4399
4307
-
Ser
GGA
[ENA]
¡û
>W1610035330
AZEK01000115
Bacillota
Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 [AZEK]
42
134
+
Ser
GGA
[ENA]
¡û
>W1610035360
AZEL01000026
Bacillota
Lactobacillus gallinarum DSM 10532 = JCM 2011 [AZEL]
65
157
+
Ser
GGA
[ENA]
¡û
>W1610035458
AZEM01000138
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [AZEM]
28096
28004
-
Ser
GGA
[ENA]
¡û
>W1610036815
AZFO01000074
Bacillota
Lactobacillus ultunensis DSM 16047 [AZFO]
1219
1127
-
Ser
GGA
[ENA]
¡û
>W1610037096
AZFU01000015
Bacillota
Lactobacillus kitasatonis DSM 16761 = JCM 1039 [AZFU]
91644
91552
-
Ser
GGA
[ENA]
¡û
>W1610037759
AZGG01000073
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
42
134
+
Ser
GGA
[ENA]
¡û
>W1610038078
AZGN01000022
Bacillota
Lactobacillus intestinalis DSM 6629 [AZGN]
57
149
+
Ser
GGA
[ENA]
¡û
>W1610044561
BBAQ01000024
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
27900
27808
-
Ser
GGA
[ENA]
¡û
>W1610045731
BBBU01000015
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
9
101
+
Ser
GGA
[ENA]
¡û
>C131001269
CP002081
Bacillota
Lactobacillus helveticus CNRZ32 [CP002081]
1871543
1871451
-
Ser
GGA
[Ensembl]
¡û
>C131007126
CP003799
Bacillota
Lactobacillus helveticus R0052 [CP003799]
478856
478948
+
Ser
GGA
[Ensembl]
¡û
>W1610528880
JQBQ01000012
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
67
159
+
Ser
GGA
[ENA]
¡û
>W1610529814
JQCJ01000050
Bacillota
Lactobacillus helveticus [JQCJ]
12002
11910
-
Ser
GGA
[ENA]
¡û
>W1610922684
LSVI01000321
Bacillota
Lactobacillus helveticus [LSVI]
4906
4814
-
Ser
GGA
[ENA]
¡û
>W1610922693
LSVJ01000007
Bacillota
Lactobacillus helveticus [LSVJ]
110
202
+
Ser
GGA
[ENA]
¡û
>W1710028706
AYZC01000015
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
31706
31614
-
Ser
GGA
[ENA]
¡û
>W1710030184
AZCM01000070
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
4399
4307
-
Ser
GGA
[ENA]
¡û
>W1710032399
AZEL01000026
Bacillota
Lactobacillus gallinarum DSM 10532 = JCM 2011 [AZEL]
65
157
+
Ser
GGA
[ENA]
¡û
>W1710032497
AZEM01000138
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [AZEM]
28096
28004
-
Ser
GGA
[ENA]
¡û
>W1710033854
AZFO01000074
Bacillota
Lactobacillus ultunensis DSM 16047 [AZFO]
1219
1127
-
Ser
GGA
[ENA]
¡û
>W1710034135
AZFU01000015
Bacillota
Lactobacillus kitasatonis DSM 16761 = JCM 1039 [AZFU]
91644
91552
-
Ser
GGA
[ENA]
¡û
>W1710034798
AZGG01000073
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
42
134
+
Ser
GGA
[ENA]
¡û
>W1710035070
AZGN01000022
Bacillota
Lactobacillus intestinalis DSM 6629 [AZGN]
57
149
+
Ser
GGA
[ENA]
¡û
>W1710041659
BBAQ01000024
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
27900
27808
-
Ser
GGA
[ENA]
¡û
>W1710042572
BBBU01000015
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
9
101
+
Ser
GGA
[ENA]
¡û
>W1710509318
FMXC01000063
Bacillota
Lactobacillus kefiranofaciens [FMXC]
4602
4510
-
Ser
GGA
[ENA]
¡û
>W1710630470
JQBQ01000012
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
67
159
+
Ser
GGA
[ENA]
¡û
>W1710631404
JQCJ01000050
Bacillota
Lactobacillus helveticus [JQCJ]
12002
11910
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK