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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5703 (102 seq.)
>W1710778447
LJCX01000028
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
708265
708356
+
Ser
GCT
[ENA]
¡û
>W1710862850
LMEQ01000033
Actinomycetota
Streptomyces sp. Root1310 [LMEQ]
366949
367040
+
Ser
GCT
[ENA]
¡û
>W1710868321
LMIZ01000007
Actinomycetota
Streptomyces sp. Root264 [LMIZ]
114559
114468
-
Ser
GCT
[ENA]
¡û
>W1710884165
LMWK01000011
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
131880
131789
-
Ser
GCT
[ENA]
¡û
>W1710884306
LMWM01000027
Actinomycetota
Streptomyces pseudovenezuelae [LMWM]
278469
278560
+
Ser
GCT
[ENA]
¡û
>W1710884766
LMWT01000015
Actinomycetota
Streptomyces avermitilis [LMWT]
17306
17397
+
Ser
GCT
[ENA]
¡û
>W1710884921
LMWV01000026
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
51265
51174
-
Ser
GCT
[ENA]
¡û
>W1710885162
LMWZ01000016
Actinomycetota
Streptomyces resistomycificus [LMWZ]
41764
41855
+
Ser
GCT
[ENA]
¡û
>W1711049581
LRQW01000686
Actinomycetota
Streptomyces scabiei [LRQW]
319
410
+
Ser
GCT
[ENA]
¡û
>W1711049643
LRQX01000820
Actinomycetota
Streptomyces scabiei [LRQX]
280
371
+
Ser
GCT
[ENA]
¡û
>W1711052218
LRSS01000760
Actinomycetota
Streptomyces scabiei [LRSS]
310
401
+
Ser
GCT
[ENA]
¡û
>W1711054050
LRTM01000788
Actinomycetota
Streptomyces scabiei [LRTM]
298
389
+
Ser
GCT
[ENA]
¡û
>W1711054115
LRTN01000864
Actinomycetota
Streptomyces scabiei [LRTN]
287
378
+
Ser
GCT
[ENA]
¡û
>W1711054157
LRTO01000039
Actinomycetota
Streptomyces scabiei [LRTO]
298
389
+
Ser
GCT
[ENA]
¡û
>W1711054328
LRTQ01000714
Actinomycetota
Streptomyces europaeiscabiei [LRTQ]
291
382
+
Ser
GCT
[ENA]
¡û
>W1711054381
LRTR01000283
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
299
390
+
Ser
GCT
[ENA]
¡û
>W1711054487
LRTS01001735
Actinomycetota
Streptomyces caniscabiei Dec-96 [LRTS]
27801
27710
-
Ser
GCT
[ENA]
¡û
>W1711089712
LSZY01000575
Actinomycetota
Streptomyces scabiei [LSZY]
294
385
+
Ser
GCT
[ENA]
¡û
>W1711455839
MJAH01000034
Actinomycetota
Streptomyces sp. LUP47B LUP47b [MJAH]
4311
4402
+
Ser
GCT
[ENA]
¡û
>W1711628595
MPOH02000017
Actinomycetota
Streptomyces phaeoluteigriseus [MPOH]
264221
264312
+
Ser
GCT
[ENA]
¡û
>W1711721747
MTJO01000001
Actinomycetota
Streptomyces avermitilis [MTJO]
774726
774817
+
Ser
GCT
[ENA]
¡û
>W1711738258
MUBA01000531
Actinomycetota
Streptomyces bobili [MUBA]
3517
3608
+
Ser
GCT
[ENA]
¡û
>W1711750984
MUNI01000136
Actinomycetota
Streptomyces reticuliscabiei [MUNI]
12018
12109
+
Ser
GCT
[ENA]
¡û
>W1711783154
MVNU01000860
Actinomycetota
Streptomyces scabiei [MVNU]
4966
4875
-
Ser
GCT
[ENA]
¡û
>W1711783173
MVNV01000076
Actinomycetota
Streptomyces caniscabiei scabiei [MVNV]
4477
4386
-
Ser
GCT
[ENA]
¡û
>W1711942061
NAVC01000086
Actinomycetota
Streptomyces sp. B9173 [NAVC]
246210
246301
+
Ser
GCT
[ENA]
¡û
>W1712081474
NHOD01000373
Actinomycetota
Streptomyces griseiscabiei scabiei [NHOD]
15619
15528
-
Ser
GCT
[ENA]
¡û
>W131000156
AEJB01000159
Actinomycetota
Streptomyces turgidiscabies Car8 [AEJB]
3269
3360
+
Ser
GCT
[ENA]
¡û
>W131087126
AOCF01000038
Actinomycetota
Streptomyces bottropensis ATCC 25435 [AOCF]
62128
62037
-
Ser
GCT
[ENA]
¡û
>W131185305
ARTP01000004
Actinomycetota
Streptomyces bottropensis ATCC 25435 [ARTP]
4698448
4698357
-
Ser
GCT
[ENA]
¡û
>W131185406
ARTR01000051
Actinomycetota
Streptomyces sp. 303MFCol5.2 [ARTR]
117733
117642
-
Ser
GCT
[ENA]
¡û
>W131185513
ARTS01000048
Actinomycetota
Streptomyces sp. 351MFTsu5.1 [ARTS]
110970
110879
-
Ser
GCT
[ENA]
¡û
>C171049530
CP016438
Actinomycetota
Streptomyces lincolnensis NRRL 2936 [CP016438]
4966021
4965930
-
Ser
GCT
-
¡û
>C020593
BA000030
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [BA000030]
5155305
5155215
-
Ser
GCT
[Ensembl]
¡û
>WENV183670073
ORJL010905182
[ORJL] groundwater metagenome; groundwater
67
160
+
Ser
GCT
[ENA]
¢þ
>C181072063
CP022744
Actinomycetota
Streptomyces lincolnensis LC-G [CP022744]
4990480
4990389
-
Ser
GCT
-
¡û
>C181164771
CP028369
Actinomycetota
Streptomyces sp. P3 [CP028369]
1992769
1992860
+
Ser
GCT
-
¡û
>C191046297
CP026652
Actinomycetota
Streptomyces dengpaensis XZHG99 [CP026652]
4469629
4469720
+
Ser
GCT
-
¡û
>C191089596
CP032427
Actinomycetota
Streptomyces griseorubiginosus 3E-1 [CP032427]
4952189
4952280
+
Ser
GCT
-
¡û
>C191187393
CP041168
Actinomycetota
Streptomyces griseorubiginosus BTU6 [CP041168]
4483233
4483142
-
Ser
GCT
-
¡û
>W141755106
JNWJ01000015
Actinomycetota
Streptomyces yerevanensis [JNWJ]
544
451
-
Ser
GCT
[ENA]
¡û
>W141759151
JNZD01000001
Actinomycetota
Streptomyces aureus [JNZD]
420775
420866
+
Ser
GCT
[ENA]
¡û
>W141761880
JOBA01000809
Actinomycetota
Streptomyces resistomycificus [JOBA]
4857
4948
+
Ser
GCT
[ENA]
¡û
>W141763313
JOBZ01000119
Actinomycetota
Streptomyces sp. NRRL WC-3774 [JOBZ]
2802
2893
+
Ser
GCT
[ENA]
¡û
>W141767983
JOEY01000029
Actinomycetota
Streptomyces fulvoviolaceus [JOEY]
90099
90190
+
Ser
GCT
[ENA]
¡û
>W141770613
JOGP01000009
Actinomycetota
Streptomyces sp. NRRL B-3229 [JOGP]
103847
103756
-
Ser
GCT
[ENA]
¡û
>W141771004
JOGW01000006
Actinomycetota
Streptomyces sp. NRRL B-3428 NRRL B-3428 [JOGW]
141336
141245
-
Ser
GCT
[ENA]
¡û
>W141771116
JOGY01000286
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
276
183
-
Ser
GCT
[ENA]
¡û
>W141808302
JPPW01000198
Actinomycetota
Streptomyces scabiei [JPPW]
25901
25810
-
Ser
GCT
[ENA]
¡û
>W141808338
JPPX01000039
Actinomycetota
Streptomyces scabiei [JPPX]
131743
131652
-
Ser
GCT
[ENA]
¡û
>W141817961
JQLE01000009
Actinomycetota
Streptomyces mirabilis [JQLE]
85008
84917
-
Ser
GCT
[ENA]
¡û
>W1910179389
BJHX01000001
Actinomycetota
Streptomyces avermitilis NBRC 14893 [BJHX]
3949593
3949502
-
Ser
GCT
[ENA]
¡û
>W1910179423
BJHY01000001
Actinomycetota
Streptomyces avermitilis ATCC 31267 [BJHY]
5119929
5120020
+
Ser
GCT
[ENA]
¡û
>W1910179490
BJHZ01000001
Actinomycetota
Streptomyces avermitilis cw2 [BJHZ]
4028085
4028176
+
Ser
GCT
[ENA]
¡û
>W1910812632
MVDM01000047
Actinomycetota
Streptomyces sp. HG99 [MVDM]
17814
17905
+
Ser
GCT
[ENA]
¡û
>W1911279215
NTGE01000040
Actinomycetota
Streptomyces sp. SA15 [NTGE]
201024
200933
-
Ser
GCT
[ENA]
¡û
>W1911497201
OCNG01000001
Actinomycetota
Streptomyces sp. 1222.2 [OCNG]
4747071
4747162
+
Ser
GCT
[ENA]
¡û
>W1911552956
PCGT01000072
Actinomycetota
Streptomyces scabiei ST129 [PCGT]
319
410
+
Ser
GCT
[ENA]
¡û
>W1911553020
PCGU01000087
Actinomycetota
Streptomyces europaeiscabiei ST1229 [PCGU]
23522
23431
-
Ser
GCT
[ENA]
¡û
>W1810000192
BEWA01000020
Actinomycetota
Streptomyces rishiriensis NBRC 13407 [BEWA]
111310
111219
-
Ser
GCT
[ENA]
¡û
>W1810073210
PEFT01000001
Actinomycetota
Streptomyces sp. 70 [PEFT]
5301977
5301886
-
Ser
GCT
[ENA]
¡û
>W1810172037
PJME01000008
Actinomycetota
Streptomyces geranii A301 [PJME]
150711
150802
+
Ser
GCT
[ENA]
¡û
>W1810174437
PJOS01000158
Actinomycetota
Streptomyces populi A249 [PJOS]
7920
8012
+
Ser
GCT
[ENA]
¡û
>W1810393996
PYBJ01000026
Actinomycetota
Streptomyces dioscori A217 [PYBJ]
131102
131193
+
Ser
GCT
[ENA]
¡û
>W1510003274
BAVY01000020
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [BAVY]
126060
125969
-
Ser
GCT
[ENA]
¡û
>W1510020940
BBYG01000012
Actinomycetota
Streptomyces sp. NBRC 110468 [BBYG]
119551
119460
-
Ser
GCT
[ENA]
¡û
>C10112503
FN554889
Actinomycetota
Streptomyces scabiei 87.22 [FN554889]
5286031
5286122
+
Ser
GCT
[Ensembl]
¡û
>W1511309993
JPPZ01000170
Actinomycetota
Streptomyces stelliscabiei P3825 [JPPZ]
9107
9016
-
Ser
GCT
[ENA]
¡û
>W1511346635
JRHJ01000024
Actinomycetota
Streptomyces galbus KCCM 41354 [JRHJ]
73807
73716
-
Ser
GCT
[ENA]
¡û
>W1511544220
JZJK01000079
Actinomycetota
Streptomyces avermitilis MA-4680 = NBRC 14893 [JZJK]
125684
125593
-
Ser
GCT
[ENA]
¡û
>W1511563936
LACL01000057
Actinomycetota
Streptomyces sp. FxanaA7 [LACL]
10511
10420
-
Ser
GCT
[ENA]
¡û
>W1511595792
LBNJ01000046
Actinomycetota
Streptomyces scabiei NRRL B-16523 [LBNJ]
253
344
+
Ser
GCT
[ENA]
¡û
>W1511620710
LCTL01000560
Actinomycetota
Streptomyces europaeiscabiei NRRL B-24443 [LCTL]
10344
10253
-
Ser
GCT
[ENA]
¡û
>W1511696252
LGDG01000234
Actinomycetota
Streptomyces sp. MMG1533 [LGDG]
10443
10534
+
Ser
GCT
[ENA]
¡û
>W1511697328
LGDW01000066
Actinomycetota
Streptomyces sp. NRRL WC-3618 [LGDW]
3686
3595
-
Ser
GCT
[ENA]
¡û
>W1511706962
LGUS01000202
Actinomycetota
Streptomyces resistomycificus NRRL 2290 [LGUS]
4290
4381
+
Ser
GCT
[ENA]
¡û
>W1610061287
BCMM01000044
Actinomycetota
Streptomyces scabiei [BCMM]
59925
60016
+
Ser
GCT
[ENA]
¡û
>W1610061318
BCMN01000002
Actinomycetota
Streptomyces turgidiscabies [BCMN]
745443
745534
+
Ser
GCT
[ENA]
¡û
>W1610633349
LIQQ01000610
Actinomycetota
Streptomyces graminilatus [LIQQ]
10374
10465
+
Ser
GCT
[ENA]
¡û
>W1610642666
LJCX01000028
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
708265
708356
+
Ser
GCT
[ENA]
¡û
>W1610725196
LMEQ01000033
Actinomycetota
Streptomyces sp. Root1310 [LMEQ]
366949
367040
+
Ser
GCT
[ENA]
¡û
>W1610730667
LMIZ01000007
Actinomycetota
Streptomyces sp. Root264 [LMIZ]
114559
114468
-
Ser
GCT
[ENA]
¡û
>W1610746091
LMWK01000011
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
131880
131789
-
Ser
GCT
[ENA]
¡û
>W1610746232
LMWM01000027
Actinomycetota
Streptomyces pseudovenezuelae [LMWM]
278469
278560
+
Ser
GCT
[ENA]
¡û
>W1610746692
LMWT01000015
Actinomycetota
Streptomyces avermitilis [LMWT]
17306
17397
+
Ser
GCT
[ENA]
¡û
>W1610746847
LMWV01000026
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
51265
51174
-
Ser
GCT
[ENA]
¡û
>W1610747088
LMWZ01000016
Actinomycetota
Streptomyces resistomycificus [LMWZ]
41764
41855
+
Ser
GCT
[ENA]
¡û
>W1610890710
LRQW01000686
Actinomycetota
Streptomyces scabiei [LRQW]
319
410
+
Ser
GCT
[ENA]
¡û
>W1610890772
LRQX01000820
Actinomycetota
Streptomyces scabiei [LRQX]
280
371
+
Ser
GCT
[ENA]
¡û
>W1610893406
LRSS01000760
Actinomycetota
Streptomyces scabiei [LRSS]
310
401
+
Ser
GCT
[ENA]
¡û
>W1610895238
LRTM01000788
Actinomycetota
Streptomyces scabiei [LRTM]
298
389
+
Ser
GCT
[ENA]
¡û
>W1610895303
LRTN01000864
Actinomycetota
Streptomyces scabiei [LRTN]
287
378
+
Ser
GCT
[ENA]
¡û
>W1610895345
LRTO01000039
Actinomycetota
Streptomyces scabiei [LRTO]
298
389
+
Ser
GCT
[ENA]
¡û
>W1610895516
LRTQ01000714
Actinomycetota
Streptomyces europaeiscabiei [LRTQ]
291
382
+
Ser
GCT
[ENA]
¡û
>W1610895569
LRTR01000283
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
299
390
+
Ser
GCT
[ENA]
¡û
>W1610895675
LRTS01001735
Actinomycetota
Streptomyces caniscabiei Dec-96 [LRTS]
27801
27710
-
Ser
GCT
[ENA]
¡û
>W1610924169
LSZY01000575
Actinomycetota
Streptomyces scabiei [LSZY]
294
385
+
Ser
GCT
[ENA]
¡û
>W1710058952
BCMM01000044
Actinomycetota
Streptomyces scabiei [BCMM]
59925
60016
+
Ser
GCT
[ENA]
¡û
>W1710058983
BCMN01000002
Actinomycetota
Streptomyces turgidiscabies [BCMN]
745443
745534
+
Ser
GCT
[ENA]
¡û
>W1710550367
FOFF01000055
Actinomycetota
Streptomyces sp. yr375 [FOFF]
45798
45889
+
Ser
GCT
[ENA]
¡û
>W1710569955
FOUV01000013
Actinomycetota
Streptomyces sp. cf124 [FOUV]
292098
292189
+
Ser
GCT
[ENA]
¡û
>W1710767781
LIQQ01000610
Actinomycetota
Streptomyces graminilatus [LIQQ]
10374
10465
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK