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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57074 (17 seq.)
>W1712109181
NJFD01000002
Actinomycetota
Mobiluncus mulieris [NJFD]
691691
691778
+
Ser
TGA
[ENA]
¡û
>WENV180403773
OBRT01014501
[OBRT] human gut metagenome; ENVO:feces
51
136
+
Ser
TGA
[ENA]
¢þ
>WENV180757952
ODHW01003605
[ODHW] human metagenome; G_DNA_Tongue dorsum
4299
4384
+
Ser
TGA
[ENA]
¢þ
>WENV180816408
ODJP01012589
[ODJP] human metagenome; G_DNA_Tongue dorsum
1940
1855
-
Ser
TGA
[ENA]
¢þ
>WENV180819930
ODJR01000908
[ODJR] human metagenome; G_DNA_Tongue dorsum
19519
19434
-
Ser
TGA
[ENA]
¢þ
>W09118052
ACCQ01000187
Actinomycetota
Mobiluncus curtisii ATCC 43063 [ACCQ]
181987
182074
+
Ser
TGA
[ENA]
¡û
>W09127319
ACKW01000052
Actinomycetota
Mobiluncus mulieris ATCC 35243 [ACKW]
130003
129916
-
Ser
TGA
[ENA]
¡û
>W10110095
ADBR01000001
Actinomycetota
Mobiluncus mulieris 1·î28Æü [ADBR]
136229
136142
-
Ser
TGA
[ENA]
¡û
>W10127260
AEEE01000014
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
298702
298615
-
Ser
TGA
[ENA]
¡û
>W10127844
AEET01000010
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
107827
107740
-
Ser
TGA
[ENA]
¡û
>C10109292
CP001992
Actinomycetota
Mobiluncus curtisii ATCC 43063 [CP001992]
730561
730648
+
Ser
TGA
[Ensembl]
¡û
>W11112532
ADBR01000001
Actinomycetota
Mobiluncus mulieris 1·î28Æü [ADBR]
136229
136142
-
Ser
TGA
[ENA]
¡û
>W11134748
AEEE01000014
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
298702
298615
-
Ser
TGA
[ENA]
¡û
>W11135332
AEET01000010
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
107827
107740
-
Ser
TGA
[ENA]
¡û
>W11137185
AEGV01000021
Actinomycetota
Mobiluncus mulieris FB024-16 [AEGV]
18884
18797
-
Ser
TGA
[ENA]
¡û
>W11143493
AEPY01000001
Actinomycetota
Mobiluncus curtisii ATCC 51333 [AEPY]
168627
168714
+
Ser
TGA
[ENA]
¡û
>W11143577
AEPZ01000012
Actinomycetota
Mobiluncus holmesii subsp. holmesii ATCC 35242 [AEPZ]
57413
57326
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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