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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57145 (76 seq.)
>W1710906770
LNOG01000004
Bacteroidota
Elizabethkingia anophelis [LNOG]
71275
71360
+
Ser
TGA
[ENA]
¡û
>W1711300446
MAGZ01000010
Bacteroidota
Elizabethkingia meningoseptica [MAGZ]
184211
184298
+
Ser
TGA
[ENA]
¡û
>W1711318358
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
689010
689095
+
Ser
TGA
[ENA]
¡û
>W1711318387
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
825113
825026
-
Ser
TGA
[ENA]
¡û
>W1711344635
MCJH01000006
Bacteroidota
Elizabethkingia meningoseptica [MCJH]
337700
337787
+
Ser
TGA
[ENA]
¡û
>W131234979
AULF01000001
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
276421
276510
+
Ser
TGA
[ENA]
¡û
>W131234981
AULF01000002
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
5500
5589
+
Ser
TGA
[ENA]
¡û
>WENV181222691
OFDC01000091
[OFDC] hot springs metagenome; Water
93762
93677
-
Ser
TGA
[ENA]
¢þ
>WENV181836785
OGVJ01029428
[OGVJ] freshwater metagenome; freshwater
335
250
-
Ser
TGA
[ENA]
¢þ
>WENV181857320
OGWO01000632
[OGWO] freshwater metagenome; freshwater
2178
2263
+
Ser
TGA
[ENA]
¢þ
>WENV183740657
PJUF01005589
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3037
3124
+
Ser
TGA
[ENA]
¢þ
>WENV170658208
JTFP01068041
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
156
71
-
Ser
TGA
[ENA]
¢þ
>WENV171002981
NKIC01001235
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
498
411
-
Ser
TGA
[ENA]
¢þ
>C181014409
CP014021
Bacteroidota
Elizabethkingia anophelis FDAARGOS_134 [CP014021]
493646
493561
-
Ser
TGA
-
¡û
>C181075471
CP023049
Bacteroidota
Chryseobacterium piperi ATCC BAA-1782 [CP023049]
1496056
1495971
-
Ser
TGA
-
¡û
>C181075472
CP023049
Bacteroidota
Chryseobacterium piperi ATCC BAA-1782 [CP023049]
1377110
1377025
-
Ser
TGA
-
¡û
>C181080680
CP023402
Bacteroidota
Elizabethkingia anophelis Ag1 [CP023402]
3574075
3574160
+
Ser
TGA
-
¡û
>C181080784
CP023404
Bacteroidota
Elizabethkingia anophelis AR4-6 [CP023404]
3574075
3574160
+
Ser
TGA
-
¡û
>C191111320
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
4232210
4232125
-
Ser
TGA
-
¡û
>C191111323
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
4051038
4050951
-
Ser
TGA
-
¡û
>C191112441
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
1335473
1335558
+
Ser
TGA
-
¡û
>C191112487
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
1491105
1491020
-
Ser
TGA
-
¡û
>C191115225
CP033914
Bacteroidota
Chryseobacterium shandongense G0239 [CP033914]
2482348
2482435
+
Ser
TGA
-
¡û
>C191115244
CP033914
Bacteroidota
Chryseobacterium shandongense G0239 [CP033914]
2724260
2724173
-
Ser
TGA
-
¡û
>C191116406
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
3498716
3498629
-
Ser
TGA
-
¡û
>C191116407
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
3349343
3349258
-
Ser
TGA
-
¡û
>C191218905
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
137321
137406
+
Ser
TGA
-
¡û
>C191218908
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
299166
299251
+
Ser
TGA
-
¡û
>W09126957
ACKQ01000007
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
54439
54526
+
Ser
TGA
[ENA]
¡û
>W09126960
ACKQ01000007
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
181086
181173
+
Ser
TGA
[ENA]
¡û
>W141809300
JPRJ01000009
Bacteroidota
Chryseobacterium piperi [JPRJ]
26336
26249
-
Ser
TGA
[ENA]
¡û
>W141809322
JPRJ01000054
Bacteroidota
Chryseobacterium piperi [JPRJ]
7544
7457
-
Ser
TGA
[ENA]
¡û
>W141815915
JQJM01000009
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
47782
47695
-
Ser
TGA
[ENA]
¡û
>W141815945
JQJM01000052
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
1425
1510
+
Ser
TGA
[ENA]
¡û
>W1910341185
FTPE01000011
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
334595
334510
-
Ser
TGA
[ENA]
¡û
>W1910341188
FTPE01000011
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
203688
203603
-
Ser
TGA
[ENA]
¡û
>W1910439666
FWDI01000005
Bacteroidota
Chryseobacterium phocaeense 6021061333 [FWDI]
1135729
1135814
+
Ser
TGA
[ENA]
¡û
>W1910439667
FWDI01000005
Bacteroidota
Chryseobacterium phocaeense 6021061333 [FWDI]
1225018
1225103
+
Ser
TGA
[ENA]
¡û
>W1910912965
NHPR01000007
Bacteroidota
Elizabethkingia miricola FL160902 [NHPR]
1018
933
-
Ser
TGA
[ENA]
¡û
>W1911397774
NWMH01000006
Bacteroidota
Elizabethkingia anophelis CSID_3000726811 [NWMH]
171045
171130
+
Ser
TGA
[ENA]
¡û
>W1911701284
QNUF01000024
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
72507
72592
+
Ser
TGA
[ENA]
¡û
>W1911701400
QNUH01000033
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
19734
19819
+
Ser
TGA
[ENA]
¡û
>W1911701779
QNVT01000002
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
439697
439782
+
Ser
TGA
[ENA]
¡û
>W1911701821
QNVT01000020
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
27894
27809
-
Ser
TGA
[ENA]
¡û
>W1911749747
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
2173519
2173604
+
Ser
TGA
[ENA]
¡û
>W1911749748
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
2186374
2186459
+
Ser
TGA
[ENA]
¡û
>W1911749823
QWIV01000013
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
866691
866776
+
Ser
TGA
[ENA]
¡û
>W1911749824
QWIV01000013
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
874945
875030
+
Ser
TGA
[ENA]
¡û
>W1810364530
PVTH01000009
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
59994
60079
+
Ser
TGA
[ENA]
¡û
>W1810364531
PVTH01000009
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
68865
68780
-
Ser
TGA
[ENA]
¡û
>W1810378739
PXJH01000003
Bacteroidota
Elizabethkingia anophelis SP4182 [PXJH]
57667
57752
+
Ser
TGA
[ENA]
¡û
>W1810475261
QAIX01000011
Bacteroidota
Chryseobacterium sp. HMWF001 [QAIX]
3543
3458
-
Ser
TGA
[ENA]
¡û
>W1810475276
QAIX01000192
Bacteroidota
Chryseobacterium sp. HMWF001 [QAIX]
2590
2677
+
Ser
TGA
[ENA]
¡û
>W1810486371
QAXV01000006
Bacteroidota
Elizabethkingia sp. YR191 [QAXV]
279329
279414
+
Ser
TGA
[ENA]
¡û
>W1810570103
QEHP01000001
Bacteroidota
Chryseobacterium sp. HMWF035 [QEHP]
6298
6211
-
Ser
TGA
[ENA]
¡û
>W1810570145
QEHP01000123
Bacteroidota
Chryseobacterium sp. HMWF035 [QEHP]
138350
138435
+
Ser
TGA
[ENA]
¡û
>W1810609233
QGTV01000008
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
135203
135288
+
Ser
TGA
[ENA]
¡û
>W1511206120
JMTN01000014
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
62565
62650
+
Ser
TGA
[ENA]
¡û
>W1511206131
JMTN01000058
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
3209
3124
-
Ser
TGA
[ENA]
¡û
>W1511344281
JRFN01000001
Bacteroidota
Elizabethkingia miricola ATCC 33958 [JRFN]
75674
75759
+
Ser
TGA
[ENA]
¡û
>W1511432486
JUGO01000004
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
291192
291279
+
Ser
TGA
[ENA]
¡û
>W1511432489
JUGO01000005
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
146714
146801
+
Ser
TGA
[ENA]
¡û
>W1511685272
LFNF01000003
Bacteroidota
Chryseobacterium sp. BLS98 [LFNF]
990939
991024
+
Ser
TGA
[ENA]
¡û
>W1511685280
LFNF01000004
Bacteroidota
Chryseobacterium sp. BLS98 [LFNF]
16262
16349
+
Ser
TGA
[ENA]
¡û
>C161077885
CP014805
Bacteroidota
Elizabethkingia anophelis CSID_3015183678 [CP014805]
80960
81045
+
Ser
TGA
-
¡û
>C161082441
CP015066
Bacteroidota
Elizabethkingia anophelis CSID_3015183684 [CP015066]
80960
81045
+
Ser
TGA
-
¡û
>W121032041
AHHG01000048
Bacteroidota
Elizabethkingia anophelis Ag1 [AHHG]
316
229
-
Ser
TGA
[ENA]
¡û
>W1610507417
FLSV01000002
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
20096
20183
+
Ser
TGA
[ENA]
¡û
>W1610765784
LNOG01000004
Bacteroidota
Elizabethkingia anophelis [LNOG]
71275
71360
+
Ser
TGA
[ENA]
¡û
>W1611061701
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
689010
689095
+
Ser
TGA
[ENA]
¡û
>W1611061730
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
825113
825026
-
Ser
TGA
[ENA]
¡û
>W1710499635
FLSV01000002
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
20096
20183
+
Ser
TGA
[ENA]
¡û
>W1710585929
FQWT01000003
Bacteroidota
Chryseobacterium oranimense [FQWT]
486921
486836
-
Ser
TGA
[ENA]
¡û
>W1710585931
FQWT01000004
Bacteroidota
Chryseobacterium oranimense [FQWT]
389844
389931
+
Ser
TGA
[ENA]
¡û
>W1710598422
FTNZ01000004
Bacteroidota
Chryseobacterium joostei [FTNZ]
552897
552982
+
Ser
TGA
[ENA]
¡û
>W1710598442
FTNZ01000006
Bacteroidota
Chryseobacterium joostei [FTNZ]
324523
324436
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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