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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57204 (37 seq.)
>W1711005779
LQNU01000067
Bacteroidota
Myroides marinus [LQNU]
2084
1999
-
Ser
TGA
[ENA]
¡û
>W131235293
AULL01000015
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
224168
224081
-
Ser
TGA
[ENA]
¡û
>W1711457595
MJBR01000016
Bacteroidota
Salegentibacter salarius [MJBR]
737
650
-
Ser
TGA
[ENA]
¡û
>W1711503220
MKTK01000003
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
76301
76214
-
Ser
TGA
[ENA]
¡û
>W1712082012
NHOS01000001
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
237552
237463
-
Ser
TGA
[ENA]
¡û
>C171016662
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
420590
420677
+
Ser
TGA
-
¡û
>C171016663
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
420982
421069
+
Ser
TGA
-
¡û
>C171018919
CP012872
Bacteroidota
Salegentibacter sp. T436 [CP012872]
3483836
3483749
-
Ser
TGA
-
¡û
>WENV180878708
ODLX01010250
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
20
107
+
Ser
TGA
[ENA]
¢þ
>W141291549
JASZ01000323
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
5117
5032
-
Ser
TGA
[ENA]
¡û
>WENV170010290
APMI01012761
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
482
395
-
Ser
TGA
[ENA]
¢þ
>WENV170379659
CETV01175692
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
566
481
-
Ser
TGA
[ENA]
¢þ
>WENV170476526
CEVI01119323
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
91
4
-
Ser
TGA
[ENA]
¢þ
>C191025408
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
1236504
1236593
+
Ser
TGA
-
¡û
>C191116464
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1931360
1931445
+
Ser
TGA
-
¡û
>C191120447
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
40820
40735
-
Ser
TGA
-
¡û
>C191120450
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
336133
336218
+
Ser
TGA
-
¡û
>C09106211
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
925892
925977
+
Ser
TGA
[Ensembl]
¡û
>W1910933663
NIUY01000002
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
184916
185002
+
Ser
TGA
[ENA]
¡û
>W1911243243
NSGJ01000015
Bacteroidota
Myroides sp. N17-2 [NSGJ]
37183
37098
-
Ser
TGA
[ENA]
¡û
>W1911243244
NSGJ01000015
Bacteroidota
Myroides sp. N17-2 [NSGJ]
22065
21980
-
Ser
TGA
[ENA]
¡û
>W1810686154
QKZW01000007
Bacteroidota
Salegentibacter mishustinae DSM 23404 [QKZW]
30552
30637
+
Ser
TGA
[ENA]
¡û
>W1810762840
QQAR01000002
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
105778
105865
+
Ser
TGA
[ENA]
¡û
>W1810762841
QQAR01000002
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
142614
142699
+
Ser
TGA
[ENA]
¡û
>W1511390857
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
640780
640865
+
Ser
TGA
[ENA]
¡û
>W1511685288
LFNG01000003
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
144851
144764
-
Ser
TGA
[ENA]
¡û
>W1610095111
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
860230
860317
+
Ser
TGA
[ENA]
¡û
>W1610856429
LQNU01000067
Bacteroidota
Myroides marinus [LQNU]
2084
1999
-
Ser
TGA
[ENA]
¡û
>WENV080063
AATO01002909
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
543
632
+
Ser
TGA
[ENA]
>W1710097906
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
860230
860317
+
Ser
TGA
[ENA]
¡û
>W1710541896
FNYS01000005
Bacteroidota
Myroides marinus [FNYS]
95323
95410
+
Ser
TGA
[ENA]
¡û
>W1710561616
FOOH01000004
Bacteroidota
Salegentibacter agarivorans [FOOH]
184071
183984
-
Ser
TGA
[ENA]
¡û
>W1710565943
FORQ01000001
Bacteroidota
Kaistella treverensis treverense [FORQ]
722487
722402
-
Ser
TGA
[ENA]
¡û
>W1710584673
FQVT01000001
Bacteroidota
Salegentibacter echinorum [FQVT]
192114
192199
+
Ser
TGA
[ENA]
¡û
>W1710603335
FUYY01000005
Bacteroidota
Salegentibacter holothuriorum [FUYY]
22832
22919
+
Ser
TGA
[ENA]
¡û
>W1710603474
FUZC01000002
Bacteroidota
Salegentibacter salinarum [FUZC]
323863
323950
+
Ser
TGA
[ENA]
¡û
>W1710604629
FVZF01000023
Bacteroidota
Salegentibacter salarius [FVZF]
61156
61243
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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