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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57209 (28 seq.)
>W1710919898
LNYB01000028
Gammaproteobacteria
Legionella feeleii [LNYB]
1573
1486
-
Ser
TGA
[ENA]
¡û
>W1710919971
LNYC01000068
Gammaproteobacteria
Legionella geestiana [LNYC]
13805
13892
+
Ser
TGA
[ENA]
¡û
>W1710920204
LNYI01000053
Gammaproteobacteria
Legionella lansingensis [LNYI]
86479
86566
+
Ser
TGA
[ENA]
¡û
>W1710920246
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
1030289
1030204
-
Ser
TGA
[ENA]
¡û
>W1710920323
LNYL01000045
Gammaproteobacteria
Legionella maceachernii [LNYL]
179548
179461
-
Ser
TGA
[ENA]
¡û
>W1710920355
LNYM01000010
Gammaproteobacteria
Legionella micdadei [LNYM]
49504
49417
-
Ser
TGA
[ENA]
¡û
>C171110837
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
1385125
1385038
-
Ser
TGA
-
¡û
>W141245604
CALJ01000154
Gammaproteobacteria
Legionella tunisiensis LegM [CALJ]
1024
937
-
Ser
TGA
[ENA]
¡û
>WENV170634314
FYBJ01000157
[FYBJ] marine metagenome; marine
1297
1384
+
Ser
TGA
[ENA]
¢þ
>C181225075
LT906451
Gammaproteobacteria
Legionella lansingensis NCTC12830 [LT906451]
1342094
1342007
-
Ser
TGA
-
¡û
>C191159060
CP038271
Gammaproteobacteria
Legionella geestiana 1308 [CP038271]
643294
643381
+
Ser
TGA
-
¡û
>C191209828
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
1861369
1861454
+
Ser
TGA
-
¡û
>W141558785
JHWF01000012
Gammaproteobacteria
Legionella lansingensis DSM 19556 = ATCC 49751 [JHWF]
86718
86805
+
Ser
TGA
[ENA]
¡û
>W141561525
JHYN01000001
Gammaproteobacteria
Legionella geestiana DSM 21217 [JHYN]
102355
102268
-
Ser
TGA
[ENA]
¡û
>C151103436
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
2026594
2026681
+
Ser
TGA
[Ensembl]
¡û
>W1610580130
LBAX01000005
Gammaproteobacteria
Legionella jordanis [LBAX]
198707
198792
+
Ser
TGA
[ENA]
¡û
>W1610583895
LBHK01000017
Gammaproteobacteria
Legionella feeleii [LBHK]
1536
1449
-
Ser
TGA
[ENA]
¡û
>W1610584646
LCUB01000008
Gammaproteobacteria
Legionella micdadei [LCUB]
195696
195783
+
Ser
TGA
[ENA]
¡û
>W1610777796
LNYB01000028
Gammaproteobacteria
Legionella feeleii [LNYB]
1573
1486
-
Ser
TGA
[ENA]
¡û
>W1610777869
LNYC01000068
Gammaproteobacteria
Legionella geestiana [LNYC]
13805
13892
+
Ser
TGA
[ENA]
¡û
>W1610778102
LNYI01000053
Gammaproteobacteria
Legionella lansingensis [LNYI]
86479
86566
+
Ser
TGA
[ENA]
¡û
>W1610778144
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
1030289
1030204
-
Ser
TGA
[ENA]
¡û
>W1610778221
LNYL01000045
Gammaproteobacteria
Legionella maceachernii [LNYL]
179548
179461
-
Ser
TGA
[ENA]
¡û
>W1610778253
LNYM01000010
Gammaproteobacteria
Legionella micdadei [LNYM]
49504
49417
-
Ser
TGA
[ENA]
¡û
>W1710601524
FUXJ01000005
Gammaproteobacteria
Legionella maceachernii [FUXJ]
79447
79360
-
Ser
TGA
[ENA]
¡û
>W1710699142
LBAX01000005
Gammaproteobacteria
Legionella jordanis [LBAX]
198707
198792
+
Ser
TGA
[ENA]
¡û
>W1710703043
LBHK01000017
Gammaproteobacteria
Legionella feeleii [LBHK]
1536
1449
-
Ser
TGA
[ENA]
¡û
>W1710703837
LCUB01000008
Gammaproteobacteria
Legionella micdadei [LCUB]
195696
195783
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK