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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57296 (37 seq.)
>W1712109969
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
3689762
3689675
-
Ser
TGA
[ENA]
¡û
>WENV180137872
OATP01001034
[OATP] human gut metagenome; faeces
10923
11010
+
Ser
TGA
[ENA]
¢þ
>WENV180143588
OATY01000004
[OATY] human gut metagenome; faeces
134092
134005
-
Ser
TGA
[ENA]
¢þ
>WENV180211561
OBAM01009110
[OBAM] human gut metagenome; human gut
1210
1123
-
Ser
TGA
[ENA]
¢þ
>WENV183357417
OLXF01035438
[OLXF] human gut metagenome; feces
243
156
-
Ser
TGA
[ENA]
¢þ
>WENV183371127
OLXV01007255
[OLXV] human gut metagenome; feces
1077
1164
+
Ser
TGA
[ENA]
¢þ
>W141350010
JCKH01000002
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
101575
101488
-
Ser
TGA
[ENA]
¡û
>WENV183521654
OMNU01016229
[OMNU] human gut metagenome; feces
165
78
-
Ser
TGA
[ENA]
¢þ
>C181002171
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
2451052
2450965
-
Ser
TGA
-
¡û
>C181055089
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
2455873
2455786
-
Ser
TGA
-
¡û
>C191008094
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
1261160
1261247
+
Ser
TGA
-
¡û
>C191152036
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
2482562
2482475
-
Ser
TGA
-
¡û
>W141710513
JMPK01000051
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
56128
56041
-
Ser
TGA
[ENA]
¡û
>W1910211956
FMIQ01000082
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
67408
67321
-
Ser
TGA
[ENA]
¡û
>W1911179188
NQMS01000011
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
91678
91591
-
Ser
TGA
[ENA]
¡û
>W1911397640
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3503465
3503378
-
Ser
TGA
[ENA]
¡û
>W1810032573
BGWW01000016
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
14669
14756
+
Ser
TGA
[ENA]
¡û
>W1810758422
QPIR01000156
Gammaproteobacteria
Hafnia paralvei C2 [QPIR]
135723
135810
+
Ser
TGA
[ENA]
¡û
>W1810758470
QPIS01000137
Gammaproteobacteria
Hafnia paralvei C3 [QPIS]
39442
39529
+
Ser
TGA
[ENA]
¡û
>W1810758543
QPIT01000119
Gammaproteobacteria
Hafnia paralvei C5 [QPIT]
135723
135810
+
Ser
TGA
[ENA]
¡û
>W1810758604
QPIU01000117
Gammaproteobacteria
Hafnia paralvei C8 [QPIU]
135723
135810
+
Ser
TGA
[ENA]
¡û
>W1810758668
QPIV01000118
Gammaproteobacteria
Hafnia paralvei C9 [QPIV]
135723
135810
+
Ser
TGA
[ENA]
¡û
>W1810784909
QRAZ01002991
Gammaproteobacteria
Hafnia paralvei C10 [QRAZ]
6220
6133
-
Ser
TGA
[ENA]
¡û
>C151057782
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
2649982
2649895
-
Ser
TGA
[Ensembl]
¡û
>W11113863
ADCU01000002
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
237699
237786
+
Ser
TGA
[ENA]
¡û
>W1511399562
JTET01000023
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
192919
193006
+
Ser
TGA
[ENA]
¡û
>W1511399617
JTEU02000008
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
312329
312416
+
Ser
TGA
[ENA]
¡û
>W1511478111
JWGZ01000019
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
637212
637125
-
Ser
TGA
[ENA]
¡û
>W1511586393
LAZF01000034
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
8532
8619
+
Ser
TGA
[ENA]
¡û
>W1511586424
LAZG01000010
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
170572
170659
+
Ser
TGA
[ENA]
¡û
>C121002384
CP002295
Gammaproteobacteria
Serratia symbiotica str. 'Cinara cedri' [CP002295]
1021454
1021367
-
Ser
TGA
[Ensembl]
¡û
>C161065263
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3471819
3471732
-
Ser
TGA
-
¡û
>C161074187
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
3241274
3241361
+
Ser
TGA
-
¡û
>C161086845
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
3498869
3498956
+
Ser
TGA
-
¡û
>W121008384
AGCI01000010
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
63519
63432
-
Ser
TGA
[ENA]
¡û
>W1610994666
LXET01000041
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
26638
26551
-
Ser
TGA
[ENA]
¡û
>W1610994985
LXEX01000055
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
32402
32315
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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