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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57302 (83 seq.)
>W1710926765
LOEL01000049
Bacteroidota
Porphyromonas gingivalis [LOEL]
13256
13171
-
Leu
TAA
[ENA]
¡û
>W131111449
APMB01000219
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
35454
35539
+
Leu
TAA
[ENA]
¡û
>W131175782
ARJN01000019
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
2242
2327
+
Leu
TAA
[ENA]
¡û
>W1712084867
NHRU01000004
Bacteroidota
Porphyromonas gingivalis [NHRU]
12760
12675
-
Leu
TAA
[ENA]
¡û
>C016355
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
582761
582845
+
Leu
TAA
[Ensembl]
¡û
>WENV180011088
FLSI01138838
[FLSI] metagenome; saliva
184
99
-
Leu
TAA
[ENA]
¢þ
>WENV180551735
OCJG01037548
[OCJG] human oral metagenome; human oral
170
255
+
Leu
TAA
[ENA]
¢þ
>WENV180731720
ODGW01008288
[ODGW] human metagenome; G_DNA_Supragingival plaque
188
103
-
Leu
TAA
[ENA]
¢þ
>W141074446
ASYL01000097
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
38369
38284
-
Leu
TAA
[ENA]
¡û
>W141145623
AWUU01000030
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
13996
14081
+
Leu
TAA
[ENA]
¡û
>W141145690
AWUV01000132
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
335
420
+
Leu
TAA
[ENA]
¡û
>W141145727
AWUW01000118
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
154
239
+
Leu
TAA
[ENA]
¡û
>W141145946
AWVC01000064
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
12652
12567
-
Leu
TAA
[ENA]
¡û
>W141145996
AWVD01000094
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
35410
35495
+
Leu
TAA
[ENA]
¡û
>W141146029
AWVE01000048
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
42192
42277
+
Leu
TAA
[ENA]
¡û
>WENV182004725
OHBE01000408
[OHBE] human gut metagenome; faeces
12720
12635
-
Leu
TAA
[ENA]
¢þ
>C08007299
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
1604903
1604818
-
Leu
TAA
[Ensembl]
¡û
>C181102089
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
2024299
2024384
+
Leu
TAA
-
¡û
>C181102118
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
660549
660634
+
Leu
TAA
-
¡û
>C181102204
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
526098
526013
-
Leu
TAA
-
¡û
>C181102237
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
1923820
1923735
-
Leu
TAA
-
¡û
>C181102263
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
493019
493104
+
Leu
TAA
-
¡û
>C181102353
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
364074
363989
-
Leu
TAA
-
¡û
>C181102404
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
220809
220724
-
Leu
TAA
-
¡û
>C181102430
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
1689631
1689716
+
Leu
TAA
-
¡û
>C181102481
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1805477
1805562
+
Leu
TAA
-
¡û
>C181102518
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
917798
917883
+
Leu
TAA
-
¡û
>C181102594
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
936928
936843
-
Leu
TAA
-
¡û
>C181123603
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
1630800
1630715
-
Leu
TAA
-
¡û
>C181123629
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
324984
325069
+
Leu
TAA
-
¡û
>C181123680
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
582761
582846
+
Leu
TAA
-
¡û
>W1910371023
FUFB01000032
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
43903
43988
+
Leu
TAA
[ENA]
¡û
>W1910371082
FUFC01000048
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
33699
33614
-
Leu
TAA
[ENA]
¡û
>W1910371116
FUFD01000049
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
47065
47150
+
Leu
TAA
[ENA]
¡û
>W1910371158
FUFE01000072
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
515
600
+
Leu
TAA
[ENA]
¡û
>W1910371185
FUFF01000008
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
321020
321105
+
Leu
TAA
[ENA]
¡û
>W1910371231
FUFG01000021
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
108977
109062
+
Leu
TAA
[ENA]
¡û
>W1910371282
FUFH01000042
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
170407
170492
+
Leu
TAA
[ENA]
¡û
>W1910371312
FUFI01000009
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
44986
45071
+
Leu
TAA
[ENA]
¡û
>W1910371365
FUFJ01000044
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
76989
77074
+
Leu
TAA
[ENA]
¡û
>W1910372559
FUGF01000022
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
108043
108128
+
Leu
TAA
[ENA]
¡û
>W1910372620
FUGG01000046
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
77069
77154
+
Leu
TAA
[ENA]
¡û
>W1911247379
NSLL01000012
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
36769
36684
-
Leu
TAA
[ENA]
¡û
>W1911247425
NSLM01000014
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
35780
35865
+
Leu
TAA
[ENA]
¡û
>W1911247461
NSLN01000018
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
38227
38142
-
Leu
TAA
[ENA]
¡û
>W1911247518
NSLO01000044
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
432
517
+
Leu
TAA
[ENA]
¡û
>W1911247556
NSLP01000031
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
12821
12736
-
Leu
TAA
[ENA]
¡û
>W1911247597
NSLQ01000020
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
3235
3150
-
Leu
TAA
[ENA]
¡û
>W1911247616
NSLR01000002
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
44977
45062
+
Leu
TAA
[ENA]
¡û
>W1911247661
NSLS01000001
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
286302
286387
+
Leu
TAA
[ENA]
¡û
>W1911247719
NSLT01000012
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
12682
12597
-
Leu
TAA
[ENA]
¡û
>W1911247754
NSLU01000020
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
8130
8045
-
Leu
TAA
[ENA]
¡û
>W1911247794
NSLV01000005
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
46880
46965
+
Leu
TAA
[ENA]
¡û
>W1911247864
NSLW01000018
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
14337
14422
+
Leu
TAA
[ENA]
¡û
>W1911247889
NSLX01000008
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
27578
27493
-
Leu
TAA
[ENA]
¡û
>W1911709130
QPGS01000023
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
22332
22247
-
Leu
TAA
[ENA]
¡û
>W1810573742
QEKY01000018
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
15505
15418
-
Leu
TAA
[ENA]
¡û
>C151089058
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
1581411
1581326
-
Leu
TAA
-
¡û
>C151089106
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
1514062
1513977
-
Leu
TAA
-
¡û
>C11117305
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
1722865
1722950
+
Leu
TAA
[Ensembl]
¡û
>W1511328381
JQJE01000044
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
2102
2187
+
Leu
TAA
[ENA]
¡û
>W1511336139
JQZY01000022
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
405
490
+
Leu
TAA
[ENA]
¡û
>W1511336363
JRAE01000063
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
107010
106925
-
Leu
TAA
[ENA]
¡û
>W1511336402
JRAF01000035
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
18955
18870
-
Leu
TAA
[ENA]
¡û
>W1511336456
JRAG01000022
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
100180
100095
-
Leu
TAA
[ENA]
¡û
>W1511336556
JRAI01000081
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
9595
9680
+
Leu
TAA
[ENA]
¡û
>W1511336588
JRAJ01000011
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
127102
127187
+
Leu
TAA
[ENA]
¡û
>W1511336632
JRAK01000115
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
10778
10863
+
Leu
TAA
[ENA]
¡û
>W1511336670
JRAL01000024
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
18963
18878
-
Leu
TAA
[ENA]
¡û
>W1511336836
JRAQ01000022
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
118907
118992
+
Leu
TAA
[ENA]
¡û
>W1511336933
JRAT01000010
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
19301
19216
-
Leu
TAA
[ENA]
¡û
>W1511343944
JRFD01000047
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
592
677
+
Leu
TAA
[ENA]
¡û
>C161018148
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
2106272
2106187
-
Leu
TAA
[Ensembl]
¡û
>C161046944
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
1628883
1628798
-
Leu
TAA
-
¡û
>C161051791
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
1529253
1529168
-
Leu
TAA
-
¡û
>W121073578
AJZS01000092
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
4227
4142
-
Leu
TAA
[ENA]
¡û
>W1610060525
BCBV01000011
Bacteroidota
Porphyromonas gingivalis [BCBV]
14018
14103
+
Leu
TAA
[ENA]
¡û
>W1610784258
LOEL01000049
Bacteroidota
Porphyromonas gingivalis [LOEL]
13256
13171
-
Leu
TAA
[ENA]
¡û
>W1710017898
ASYM01000096
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
17824
17739
-
Leu
TAA
[ENA]
¡û
>W1710017925
ASYN01000117
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
23396
23311
-
Leu
TAA
[ENA]
¡û
>W1710017952
ASYO01000008
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
3133
3048
-
Leu
TAA
[ENA]
¡û
>W1710018024
ASYP01000105
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
12646
12561
-
Leu
TAA
[ENA]
¡û
>W1710057780
BCBV01000011
Bacteroidota
Porphyromonas gingivalis [BCBV]
14018
14103
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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