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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5736 (107 seq.)
>W1710998931
LQCY01000039
Gammaproteobacteria
Mannheimia haemolytica [LQCY]
37520
37614
+
Ser
GCT
[ENA]
¡û
>W1710999150
LQDD01000101
Gammaproteobacteria
Mannheimia haemolytica [LQDD]
293380
293286
-
Ser
GCT
[ENA]
¡û
>W1710999242
LQDF01000099
Gammaproteobacteria
Mannheimia haemolytica [LQDF]
293315
293221
-
Ser
GCT
[ENA]
¡û
>W1710999408
LQDK01000200
Gammaproteobacteria
Mannheimia haemolytica [LQDK]
44352
44446
+
Ser
GCT
[ENA]
¡û
>W1710999533
LQDN01000088
Gammaproteobacteria
Mannheimia haemolytica [LQDN]
44375
44469
+
Ser
GCT
[ENA]
¡û
>W1710999599
LQDO01000104
Gammaproteobacteria
Mannheimia haemolytica [LQDO]
293237
293143
-
Ser
GCT
[ENA]
¡û
>W1711000003
LQDZ01000081
Gammaproteobacteria
Mannheimia haemolytica [LQDZ]
37215
37309
+
Ser
GCT
[ENA]
¡û
>W1711000103
LQEB01000090
Gammaproteobacteria
Mannheimia haemolytica [LQEB]
293192
293098
-
Ser
GCT
[ENA]
¡û
>W1711000287
LQEG01000101
Gammaproteobacteria
Mannheimia haemolytica [LQEG]
44352
44446
+
Ser
GCT
[ENA]
¡û
>W1711000438
LQEJ01000092
Gammaproteobacteria
Mannheimia haemolytica [LQEJ]
293069
292975
-
Ser
GCT
[ENA]
¡û
>W1711000484
LQEK01000092
Gammaproteobacteria
Mannheimia haemolytica [LQEK]
293068
292974
-
Ser
GCT
[ENA]
¡û
>W1711000568
LQEM01000098
Gammaproteobacteria
Mannheimia haemolytica [LQEM]
37215
37309
+
Ser
GCT
[ENA]
¡û
>W1711000683
LQEP01000135
Gammaproteobacteria
Mannheimia haemolytica [LQEP]
37215
37309
+
Ser
GCT
[ENA]
¡û
>W1711000760
LQER01000104
Gammaproteobacteria
Mannheimia haemolytica [LQER]
44352
44446
+
Ser
GCT
[ENA]
¡û
>W1711000911
LQEU01000106
Gammaproteobacteria
Mannheimia haemolytica [LQEU]
37214
37308
+
Ser
GCT
[ENA]
¡û
>W1711001024
LQEX01000092
Gammaproteobacteria
Mannheimia haemolytica [LQEX]
44352
44446
+
Ser
GCT
[ENA]
¡û
>W1711001111
LQEZ01000080
Gammaproteobacteria
Mannheimia haemolytica [LQEZ]
37215
37309
+
Ser
GCT
[ENA]
¡û
>W1711001289
LQFD01000115
Gammaproteobacteria
Mannheimia haemolytica [LQFD]
277953
277859
-
Ser
GCT
[ENA]
¡û
>W1711001497
LQFI01000105
Gammaproteobacteria
Mannheimia haemolytica [LQFI]
37215
37309
+
Ser
GCT
[ENA]
¡û
>W1711001591
LQFK01000070
Gammaproteobacteria
Mannheimia haemolytica [LQFK]
37520
37614
+
Ser
GCT
[ENA]
¡û
>W1711001777
LQFP01000102
Gammaproteobacteria
Mannheimia haemolytica [LQFP]
44352
44446
+
Ser
GCT
[ENA]
¡û
>W1711001833
LQFQ01000078
Gammaproteobacteria
Mannheimia haemolytica [LQFQ]
37215
37309
+
Ser
GCT
[ENA]
¡û
>W1711001872
LQFR01000093
Gammaproteobacteria
Mannheimia haemolytica [LQFR]
44352
44446
+
Ser
GCT
[ENA]
¡û
>W1711002088
LQFW01000111
Gammaproteobacteria
Mannheimia haemolytica [LQFW]
37215
37309
+
Ser
GCT
[ENA]
¡û
>W1711002142
LQFX01000077
Gammaproteobacteria
Mannheimia haemolytica [LQFX]
293496
293402
-
Ser
GCT
[ENA]
¡û
>W1711002273
LQGA01000119
Gammaproteobacteria
Mannheimia haemolytica [LQGA]
293238
293144
-
Ser
GCT
[ENA]
¡û
>W1711002945
LQGQ01000097
Gammaproteobacteria
Mannheimia haemolytica [LQGQ]
293236
293142
-
Ser
GCT
[ENA]
¡û
>W1711388498
MEHR01000008
Gammaproteobacteria
Mannheimia haemolytica [MEHR]
37633
37727
+
Ser
GCT
[ENA]
¡û
>W1711538537
MLYL01000059
Gammaproteobacteria
Mannheimia haemolytica [MLYL]
292977
292883
-
Ser
GCT
[ENA]
¡û
>W1711538578
MLYM01000052
Gammaproteobacteria
Mannheimia haemolytica [MLYM]
293113
293019
-
Ser
GCT
[ENA]
¡û
>W1711766012
MUYA01000004
Gammaproteobacteria
Haemophilus paracuniculus [MUYA]
133198
133292
+
Ser
GCT
[ENA]
¡û
>W131091219
AOGP01000068
Gammaproteobacteria
Mannheimia haemolytica serotype 6 str. H23 [AOGP]
293227
293133
-
Ser
GCT
[ENA]
¡û
>w017973
AASA01000148
Gammaproteobacteria
Mannheimia haemolytica PHL213 [AASA]
2562
2466
-
Ser
GCT
[ENA]
¡û
>WENV180011447
FLSK01003058
[FLSK] metagenome; saliva
20108
20014
-
Ser
GCT
[ENA]
¢þ
>WENV180161167
OAVD01000846
[OAVD] human gut metagenome; faeces
5125
5219
+
Ser
GCT
[ENA]
¢þ
>WENV180226227
OBBP01110192
[OBBP] human oral metagenome; human oral
69
163
+
Ser
GCT
[ENA]
¢þ
>WENV180241090
OBDF01021450
[OBDF] human oral metagenome; human oral
125
31
-
Ser
GCT
[ENA]
¢þ
>WENV180456976
OBXT01000604
[OBXT] human gut metagenome; faeces
305
211
-
Ser
GCT
[ENA]
¢þ
>WENV180722313
ODGM01000080
[ODGM] human metagenome; G_DNA_Palatine Tonsils
19941
19847
-
Ser
GCT
[ENA]
¢þ
>W141082111
ATSY01000005
Gammaproteobacteria
Mannheimia haemolytica D193 [ATSY]
36646
36552
-
Ser
GCT
[ENA]
¡û
>W141082165
ATSZ01000005
Gammaproteobacteria
Mannheimia haemolytica MhBrain2012 [ATSZ]
2264
2170
-
Ser
GCT
[ENA]
¡û
>W141082232
ATTA01000013
Gammaproteobacteria
Mannheimia haemolytica MhSwine2000 [ATTA]
189
95
-
Ser
GCT
[ENA]
¡û
>W141082817
AUNK01000068
Gammaproteobacteria
Mannheimia haemolytica D35 [AUNK]
179
85
-
Ser
GCT
[ENA]
¡û
>W141082851
AUNL01000010
Gammaproteobacteria
Mannheimia haemolytica D38 [AUNL]
2185
2091
-
Ser
GCT
[ENA]
¡û
>WENV180986345
ODVJ01139861
[ODVJ] human metagenome; G_DNA_Tongue dorsum
105
11
-
Ser
GCT
[ENA]
¢þ
>WENV180989436
ODVL01199605
[ODVL] human metagenome; G_DNA_Tongue dorsum
163
69
-
Ser
GCT
[ENA]
¢þ
>WENV181042044
ODXS01129174
[ODXS] human metagenome; G_DNA_Tongue dorsum
133
227
+
Ser
GCT
[ENA]
¢þ
>WENV181084822
OEAX01000148
[OEAX] human metagenome; G_DNA_Tongue dorsum
30989
31083
+
Ser
GCT
[ENA]
¢þ
>WENV181101311
OECM01059440
[OECM] human metagenome; G_DNA_Buccal mucosa
134
40
-
Ser
GCT
[ENA]
¢þ
>WENV181551496
OGIN01024254
[OGIN] metagenome; Human gut stool
558
652
+
Ser
GCT
[ENA]
¢þ
>C181075105
CP023043
Gammaproteobacteria
Mannheimia haemolytica 193 [CP023043]
406647
406741
+
Ser
GCT
-
¡û
>C181075168
CP023044
Gammaproteobacteria
Mannheimia haemolytica 191 [CP023044]
475112
475206
+
Ser
GCT
-
¡û
>C181075229
CP023046
Gammaproteobacteria
Mannheimia haemolytica 187 [CP023046]
409846
409940
+
Ser
GCT
-
¡û
>C181075291
CP023047
Gammaproteobacteria
Mannheimia haemolytica 186 [CP023047]
471910
472004
+
Ser
GCT
-
¡û
>C181187436
CP030062
Gammaproteobacteria
Mannheimia varigena Teagasc 1 [CP030062]
92952
92858
-
Ser
GCT
-
¡û
>C181204593
LS483299
Gammaproteobacteria
Mannheimia haemolytica NCTC10609 [LS483299]
216557
216651
+
Ser
GCT
-
¡û
>C191212648
LR134495
Gammaproteobacteria
Mannheimia haemolytica NCTC10643 [LR134495]
92655
92561
-
Ser
GCT
-
¡û
>C141005823
CP006619
Gammaproteobacteria
Mannheimia haemolytica USMARC_2286 [CP006619]
2241955
2241861
-
Ser
GCT
[Ensembl]
¡û
>W1810578226
QEPN01000007
Gammaproteobacteria
Haemophilus sputorum C2002001239 [QEPN]
51992
52086
+
Ser
GCT
[ENA]
¡û
>W1810579187
QEQG01000004
Gammaproteobacteria
Haemophilus sputorum C2015005473 [QEQG]
133570
133664
+
Ser
GCT
[ENA]
¡û
>W1810579249
QEQH01000005
Gammaproteobacteria
Haemophilus sputorum C2015005679 [QEQH]
133570
133664
+
Ser
GCT
[ENA]
¡û
>C151014976
CP006942
Gammaproteobacteria
Mannheimia sp. USDA-ARS-USMARC-1261 [CP006942]
440738
440644
-
Ser
GCT
[Ensembl]
¡û
>C151015033
CP006943
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1296 [CP006943]
1874512
1874418
-
Ser
GCT
[Ensembl]
¡û
>C151015094
CP006944
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1312 [CP006944]
1788144
1788050
-
Ser
GCT
[Ensembl]
¡û
>C151015260
CP006953
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1388 [CP006953]
354860
354954
+
Ser
GCT
[Ensembl]
¡û
>C151015316
CP006954
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-188 [CP006954]
399878
399972
+
Ser
GCT
[Ensembl]
¡û
>C151015373
CP006955
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-189 [CP006955]
444701
444795
+
Ser
GCT
[Ensembl]
¡û
>C151015465
CP006956
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-190 [CP006956]
1987320
1987226
-
Ser
GCT
[Ensembl]
¡û
>C151015539
CP006957
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-184 [CP006957]
429830
429736
-
Ser
GCT
[Ensembl]
¡û
>C151076544
CP011098
Gammaproteobacteria
Mannheimia haemolytica 89010807N [CP011098]
476056
476150
+
Ser
GCT
[Ensembl]
¡û
>C151076607
CP011099
Gammaproteobacteria
Mannheimia haemolytica 89010807N lktA- [CP011099]
476081
476175
+
Ser
GCT
[Ensembl]
¡û
>W10108036
ACZX01000023
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. OVINE [ACZX]
44298
44392
+
Ser
GCT
[ENA]
¡û
>W10108091
ACZY01000039
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. BOVINE [ACZY]
2030
1936
-
Ser
GCT
[ENA]
¡û
>W11110423
ACZX01000023
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. OVINE [ACZX]
44298
44392
+
Ser
GCT
[ENA]
¡û
>W11110478
ACZY01000039
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. BOVINE [ACZY]
2030
1936
-
Ser
GCT
[ENA]
¡û
>W1511302917
JPIZ01000004
Gammaproteobacteria
Mannheimia haemolytica MH10517 [JPIZ]
293067
292973
-
Ser
GCT
[ENA]
¡û
>W11167708
AFNK01000006
Gammaproteobacteria
Haemophilus sputorum CCUG 13788 [AFNK]
38780
38686
-
Ser
GCT
[ENA]
¡û
>W121111646
ALJP01000023
Gammaproteobacteria
Haemophilus sputorum HK 2154 [ALJP]
19639
19545
-
Ser
GCT
[ENA]
¡û
>C131006041
CP003745
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-192 [CP003745]
2008749
2008655
-
Ser
GCT
[Ensembl]
¡û
>C131014016
CP004752
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-183 [CP004752]
477360
477454
+
Ser
GCT
[Ensembl]
¡û
>C131014110
CP004753
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-185 [CP004753]
2144124
2144030
-
Ser
GCT
[Ensembl]
¡û
>C131015161
CP005383
Gammaproteobacteria
Mannheimia haemolytica M42548 [CP005383]
90374
90280
-
Ser
GCT
[Ensembl]
¡û
>C131016543
CP005972
Gammaproteobacteria
Mannheimia haemolytica D153 [CP005972]
1099519
1099425
-
Ser
GCT
[Ensembl]
¡û
>C131017614
CP006573
Gammaproteobacteria
Mannheimia haemolytica D171 [CP006573]
1092008
1091914
-
Ser
GCT
[Ensembl]
¡û
>C131017676
CP006574
Gammaproteobacteria
Mannheimia haemolytica D174 [CP006574]
1133912
1133818
-
Ser
GCT
[Ensembl]
¡û
>W1610516319
JACI01000002
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
732965
733059
+
Ser
GCT
[ENA]
¡û
>W1610609517
LFXV01000009
Gammaproteobacteria
Mannheimia haemolytica [LFXV]
36636
36542
-
Ser
GCT
[ENA]
¡û
>W1610609549
LFXW01000007
Gammaproteobacteria
Mannheimia haemolytica [LFXW]
2041
1947
-
Ser
GCT
[ENA]
¡û
>W1610609624
LFXX01000051
Gammaproteobacteria
Mannheimia haemolytica [LFXX]
2338
2244
-
Ser
GCT
[ENA]
¡û
>W1610609674
LFXY01000063
Gammaproteobacteria
Mannheimia haemolytica [LFXY]
8363
8457
+
Ser
GCT
[ENA]
¡û
>W1610609698
LFXZ01000015
Gammaproteobacteria
Mannheimia haemolytica [LFXZ]
44298
44392
+
Ser
GCT
[ENA]
¡û
>W1610609739
LFYA01000018
Gammaproteobacteria
Mannheimia haemolytica [LFYA]
2238
2144
-
Ser
GCT
[ENA]
¡û
>W1610609803
LFYB01000078
Gammaproteobacteria
Mannheimia haemolytica [LFYB]
8284
8378
+
Ser
GCT
[ENA]
¡û
>W1610609825
LFYC01000015
Gammaproteobacteria
Mannheimia haemolytica [LFYC]
44298
44392
+
Ser
GCT
[ENA]
¡û
>W1610609893
LFYD01000045
Gammaproteobacteria
Mannheimia haemolytica [LFYD]
2212
2118
-
Ser
GCT
[ENA]
¡û
>W1610609924
LFYE01000017
Gammaproteobacteria
Mannheimia haemolytica [LFYE]
45820
45914
+
Ser
GCT
[ENA]
¡û
>W1710611661
JACI01000002
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
732965
733059
+
Ser
GCT
[ENA]
¡û
>W1710730804
LFXV01000009
Gammaproteobacteria
Mannheimia haemolytica [LFXV]
36636
36542
-
Ser
GCT
[ENA]
¡û
>W1710730836
LFXW01000007
Gammaproteobacteria
Mannheimia haemolytica [LFXW]
2041
1947
-
Ser
GCT
[ENA]
¡û
>W1710730911
LFXX01000051
Gammaproteobacteria
Mannheimia haemolytica [LFXX]
2338
2244
-
Ser
GCT
[ENA]
¡û
>W1710730961
LFXY01000063
Gammaproteobacteria
Mannheimia haemolytica [LFXY]
8363
8457
+
Ser
GCT
[ENA]
¡û
>W1710730985
LFXZ01000015
Gammaproteobacteria
Mannheimia haemolytica [LFXZ]
44298
44392
+
Ser
GCT
[ENA]
¡û
>W1710731026
LFYA01000018
Gammaproteobacteria
Mannheimia haemolytica [LFYA]
2238
2144
-
Ser
GCT
[ENA]
¡û
>W1710731090
LFYB01000078
Gammaproteobacteria
Mannheimia haemolytica [LFYB]
8284
8378
+
Ser
GCT
[ENA]
¡û
>W1710731112
LFYC01000015
Gammaproteobacteria
Mannheimia haemolytica [LFYC]
44298
44392
+
Ser
GCT
[ENA]
¡û
>W1710731180
LFYD01000045
Gammaproteobacteria
Mannheimia haemolytica [LFYD]
2212
2118
-
Ser
GCT
[ENA]
¡û
>W1710731211
LFYE01000017
Gammaproteobacteria
Mannheimia haemolytica [LFYE]
45820
45914
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK