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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5756 (34 seq.)
>W1710867094
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
13525
13432
-
Ser
GCT
[ENA]
¡û
>W1711082090
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
2528755
2528662
-
Ser
GCT
[ENA]
¡û
>W131046007
AMSA01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
494003
493910
-
Ser
GCT
[ENA]
¡û
>W1712110311
NJGV01000002
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
239509
239416
-
Ser
GCT
[ENA]
¡û
>C171021240
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
2381421
2381328
-
Ser
GCT
-
¡û
>C171085354
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
1268870
1268963
+
Ser
GCT
-
¡û
>WENV180033693
FTKL01011918
[FTKL] metagenome; soil
45
138
+
Ser
GCT
[ENA]
¢þ
>WENV181838839
OGVN01025198
[OGVN] freshwater metagenome; freshwater
691
784
+
Ser
GCT
[ENA]
¢þ
>W141258919
CBXX010000040
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
32970
32877
-
Ser
GCT
[ENA]
¡û
>WENV183733519
PJTY01003373
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1553
1460
-
Ser
GCT
[ENA]
¢þ
>WENV183735083
PJUA01000809
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
10202
10109
-
Ser
GCT
[ENA]
¢þ
>WENV183739165
PJUE01002544
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1056
1149
+
Ser
GCT
[ENA]
¢þ
>WENV170165398
CEON01118600
[CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
361
454
+
Ser
GCT
[ENA]
¢þ
>WENV170840725
MDSZ01209831
[MDSZ] marine metagenome; seawater
358
451
+
Ser
GCT
[ENA]
¢þ
>C181071862
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
2142915
2142822
-
Ser
GCT
-
¡û
>C191029371
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
2369084
2368991
-
Ser
GCT
-
¡û
>W1910548763
FZOT01000004
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
83060
83153
+
Ser
GCT
[ENA]
¡û
>W1911802728
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
1634840
1634933
+
Ser
GCT
[ENA]
¡û
>W1911802807
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
2027490
2027397
-
Ser
GCT
[ENA]
¡û
>W1810887516
QUQN01000001
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
48338
48245
-
Ser
GCT
[ENA]
¡û
>C151082388
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
2520147
2520054
-
Ser
GCT
-
¡û
>C10107836
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2406249
2406156
-
Ser
GCT
[Ensembl]
¡û
>W1511480672
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
3484727
3484634
-
Ser
GCT
[ENA]
¡û
>W1511683823
LFLT01000004
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
165255
165348
+
Ser
GCT
[ENA]
¡û
>W1511683873
LFLU01000004
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
146311
146404
+
Ser
GCT
[ENA]
¡û
>W1610070428
BCTG01000006
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
165255
165348
+
Ser
GCT
[ENA]
¡û
>W1610071864
BCUJ01000035
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
4636
4543
-
Ser
GCT
[ENA]
¡û
>W121061953
AJHH01000098
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
18582
18675
+
Ser
GCT
[ENA]
¡û
>W121068713
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
885107
885014
-
Ser
GCT
[ENA]
¡û
>W121085186
AKJA01000145
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
9212
9305
+
Ser
GCT
[ENA]
¡û
>W121086364
AKJW01000013
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
9229
9322
+
Ser
GCT
[ENA]
¡û
>W1610729440
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
13525
13432
-
Ser
GCT
[ENA]
¡û
>W1710067801
BCTG01000006
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
165255
165348
+
Ser
GCT
[ENA]
¡û
>W1710069066
BCUJ01000035
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
4636
4543
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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