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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5761 (14 seq.)
>C171130498
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
247895
247988
+
Ser
GCT
-
¡û
>WENV180022344
FTFY01001154
[FTFY] metagenome; soil
16666
16573
-
Ser
GCT
[ENA]
¢þ
>WENV180029745
FTJL01003090
[FTJL] metagenome; soil
1110
1203
+
Ser
GCT
[ENA]
¢þ
>WENV170708891
LNFM01000019
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
116403
116496
+
Ser
GCT
[ENA]
¢þ
>W1810400001
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1700128
1700035
-
Ser
GCT
[ENA]
¡û
>C151062597
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2572894
2572987
+
Ser
GCT
[Ensembl]
¡û
>C11105096
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
2785026
2784933
-
Ser
GCT
[Ensembl]
¡û
>C161053617
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3253622
3253529
-
Ser
GCT
[Ensembl]
¡û
>C161053711
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
3136614
3136521
-
Ser
GCT
[Ensembl]
¡û
>C161053785
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2461086
2461179
+
Ser
GCT
[Ensembl]
¡û
>W1710530379
FNOR01000022
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
60348
60441
+
Ser
GCT
[ENA]
¡û
>W1710556452
FOKF01000018
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
90114
90207
+
Ser
GCT
[ENA]
¡û
>W1710557525
FOLC01000003
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
22869
22776
-
Ser
GCT
[ENA]
¡û
>W1710564210
FOQI01000001
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
363954
363861
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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