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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5805 (51 seq.)
>W1710934460
LOJI01000005
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
248585
248679
+
Ser
GCT
[ENA]
¡û
>W1710934503
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
221220
221314
+
Ser
GCT
[ENA]
¡û
>W1711147347
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
857068
857162
+
Ser
GCT
[ENA]
¡û
>W1711149056
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
520675
520769
+
Ser
GCT
[ENA]
¡û
>W1711149092
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
542860
542954
+
Ser
GCT
[ENA]
¡û
>W1711149129
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
293154
293248
+
Ser
GCT
[ENA]
¡û
>W1711149166
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
963318
963412
+
Ser
GCT
[ENA]
¡û
>W1711272420
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
230775
230869
+
Ser
GCT
[ENA]
¡û
>W1711281980
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
404506
404600
+
Ser
GCT
[ENA]
¡û
>W1711282033
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
356813
356907
+
Ser
GCT
[ENA]
¡û
>W1711301923
MAIK01000713
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
898
992
+
Ser
GCT
[ENA]
¡û
>W1711421604
MHZG01000010
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
57054
57148
+
Ser
GCT
[ENA]
¡û
>W1711625769
MPIY01000002
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
70286
70380
+
Ser
GCT
[ENA]
¡û
>W1711932801
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
720901
720995
+
Ser
GCT
[ENA]
¡û
>W1712077053
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
125085
125179
+
Ser
GCT
[ENA]
¡û
>C171035111
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
999387
999481
+
Ser
GCT
-
¡û
>C171035150
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
998916
999010
+
Ser
GCT
-
¡û
>C171035188
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
947669
947763
+
Ser
GCT
-
¡û
>W131220810
ATZV01000050
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
5566
5472
-
Ser
GCT
[ENA]
¡û
>C017380
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
857068
857162
+
Ser
GCT
[Ensembl]
¡û
>WENV180377762
OBON01114578
[OBON] marine metagenome; sea water
128
34
-
Ser
GCT
[ENA]
¢þ
>WENV180391172
OBPM01027511
[OBPM] marine metagenome; ENVO:00002010
364
458
+
Ser
GCT
[ENA]
¢þ
>WENV180591581
OCOV01051197
[OCOV] marine metagenome; ENVO:01000301
233
139
-
Ser
GCT
[ENA]
¢þ
>WENV180594086
OCOY01032648
[OCOY] marine metagenome; ENVO:00002010
176
82
-
Ser
GCT
[ENA]
¢þ
>WENV181120797
OEFK01060741
[OEFK] marine metagenome; ENVO:00002010 seawater
399
305
-
Ser
GCT
[ENA]
¢þ
>WENV181370726
OFQT01006408
[OFQT] freshwater metagenome; Freshwater Lake
170
76
-
Ser
GCT
[ENA]
¢þ
>C08007632
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
846657
846566
-
Ser
GCT
[Ensembl]
¡û
>WENV170609506
FUWD011423069
[FUWD] metagenome; unknown
435
341
-
Ser
GCT
[ENA]
¢þ
>WENV170616291
FUWD012883323
[FUWD] metagenome; unknown
325
231
-
Ser
GCT
[ENA]
¢þ
>WENV170619628
FUWD013018041
[FUWD] metagenome; unknown
727
821
+
Ser
GCT
[ENA]
¢þ
>WENV170627734
FUWD013236518
[FUWD] metagenome; unknown
727
821
+
Ser
GCT
[ENA]
¢þ
>C181078383
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
851331
851425
+
Ser
GCT
-
¡û
>C181187696
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
868383
868289
-
Ser
GCT
-
¡û
>C181218873
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
792823
792917
+
Ser
GCT
-
¡û
>C181218909
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
516977
517071
+
Ser
GCT
-
¡û
>C181218979
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
599175
599269
+
Ser
GCT
-
¡û
>C181219030
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1099245
1099151
-
Ser
GCT
-
¡û
>C181219083
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
520922
521016
+
Ser
GCT
-
¡û
>W09106295
AAUC01000009
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
12762
12668
-
Ser
GCT
[ENA]
¡û
>W09107499
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
746891
746985
+
Ser
GCT
[ENA]
¡û
>C141003797
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
855462
855556
+
Ser
GCT
[Ensembl]
¡û
>W1911490737
OANS01000002
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
338166
338072
-
Ser
GCT
[ENA]
¡û
>W1810699153
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1293282
1293188
-
Ser
GCT
[ENA]
¡û
>W1810699200
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
573009
572915
-
Ser
GCT
[ENA]
¡û
>C151025651
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
946930
947024
+
Ser
GCT
[Ensembl]
¡û
>C161092394
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1085533
1085439
-
Ser
GCT
[Ensembl]
¡û
>WENV058497
AACY023331042
Marine microbial communities from Global Ocean Sampling (GOS)
397
493
+
Ser
GCT
[ENA]
>WENV058604
AACY023335191
Marine microbial communities from Global Ocean Sampling (GOS)
1093
997
-
Ser
GCT
[ENA]
>W1610791991
LOJI01000005
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
248585
248679
+
Ser
GCT
[ENA]
¡û
>W1610792034
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
221220
221314
+
Ser
GCT
[ENA]
¡û
>W1611052763
MAIK01000713
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
898
992
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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