This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5858 (123 seq.)
>W1711068978
LSFF01000010
Bacillota
Latilactobacillus sakei [LSFF]
3926
3836
-
Ser
TGA
[ENA]
¡û
>W1711069005
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
950
1040
+
Ser
TGA
[ENA]
¡û
>W1711484735
MKDC01000027
Bacillota
Latilactobacillus sakei [MKDC]
221
131
-
Ser
TGA
[ENA]
¡û
>W1711484750
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
871
961
+
Ser
TGA
[ENA]
¡û
>W1711484765
MKDD01000001
Bacillota
Latilactobacillus sakei [MKDD]
309457
309547
+
Ser
TGA
[ENA]
¡û
>W1711484803
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
18059
17969
-
Ser
TGA
[ENA]
¡û
>W1711484816
MKDE01000001
Bacillota
Latilactobacillus sakei [MKDE]
363153
363243
+
Ser
TGA
[ENA]
¡û
>W1711484837
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
1589
1679
+
Ser
TGA
[ENA]
¡û
>W1711484946
MKDG01000036
Bacillota
Latilactobacillus curvatus [MKDG]
58722
58632
-
Ser
TGA
[ENA]
¡û
>W1711485041
MKDJ01000007
Bacillota
Latilactobacillus sakei [MKDJ]
68648
68558
-
Ser
TGA
[ENA]
¡û
>W1711485054
MKDJ01000020
Bacillota
Latilactobacillus sakei [MKDJ]
396
486
+
Ser
TGA
[ENA]
¡û
>W1711485240
MKDR01000023
Bacillota
Latilactobacillus curvatus [MKDR]
30197
30107
-
Ser
TGA
[ENA]
¡û
>W1711487519
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
904
994
+
Ser
TGA
[ENA]
¡û
>W1711487549
MKGC01000045
Bacillota
Latilactobacillus curvatus [MKGC]
30220
30130
-
Ser
TGA
[ENA]
¡û
>W1711487565
MKGD01000012
Bacillota
Latilactobacillus curvatus [MKGD]
30220
30130
-
Ser
TGA
[ENA]
¡û
>C171057539
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
906348
906438
+
Ser
TGA
-
¡û
>C171057560
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1552748
1552658
-
Ser
TGA
-
¡û
>W131196446
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
872
962
+
Ser
TGA
[ENA]
¡û
>W131196463
ASTI01000012
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
85355
85445
+
Ser
TGA
[ENA]
¡û
>C012619
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
452028
452118
+
Ser
TGA
[Ensembl]
¡û
>C012635
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
819573
819663
+
Ser
TGA
[Ensembl]
¡û
>W141228341
BALW01000001
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
281331
281241
-
Ser
TGA
[ENA]
¡û
>W141228368
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
26719
26629
-
Ser
TGA
[ENA]
¡û
>WENV182539956
OIXV01036547
[OIXV] human gut metagenome; faeces
1132
1222
+
Ser
TGA
[ENA]
¢þ
>C181003626
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
1607746
1607656
-
Ser
TGA
-
¡û
>C181003649
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
26729
26639
-
Ser
TGA
-
¡û
>C181003702
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1453912
1453822
-
Ser
TGA
-
¡û
>C181003718
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1083355
1083265
-
Ser
TGA
-
¡û
>C181044610
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
451713
451803
+
Ser
TGA
-
¡û
>C181044627
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
807305
807395
+
Ser
TGA
-
¡û
>C181066074
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
994380
994470
+
Ser
TGA
-
¡û
>C181066095
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1625450
1625360
-
Ser
TGA
-
¡û
>C181066162
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1621053
1620963
-
Ser
TGA
-
¡û
>C181066181
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1090328
1090238
-
Ser
TGA
-
¡û
>C181071473
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
4792
4882
+
Ser
TGA
-
¡û
>C181071489
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
413123
413213
+
Ser
TGA
-
¡û
>C181113652
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1326731
1326821
+
Ser
TGA
-
¡û
>C181113668
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1719914
1720004
+
Ser
TGA
-
¡û
>C181114110
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
639946
639856
-
Ser
TGA
-
¡û
>C181114126
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
278374
278284
-
Ser
TGA
-
¡û
>C181123532
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
492073
492163
+
Ser
TGA
-
¡û
>C181123548
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
993318
993408
+
Ser
TGA
-
¡û
>C181186071
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
872548
872638
+
Ser
TGA
-
¡û
>C181186092
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1505551
1505461
-
Ser
TGA
-
¡û
>C181194815
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
942408
942498
+
Ser
TGA
-
¡û
>C181194836
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1639816
1639726
-
Ser
TGA
-
¡û
>C181227420
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
472831
472921
+
Ser
TGA
-
¡û
>C181227436
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
825501
825591
+
Ser
TGA
-
¡û
>C181227476
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
490703
490793
+
Ser
TGA
-
¡û
>C181227492
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
945314
945404
+
Ser
TGA
-
¡û
>C181227539
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
484186
484276
+
Ser
TGA
-
¡û
>C181227555
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
885424
885514
+
Ser
TGA
-
¡û
>C181227600
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
494240
494330
+
Ser
TGA
-
¡û
>C181227616
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
914630
914720
+
Ser
TGA
-
¡û
>C181227661
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
473194
473284
+
Ser
TGA
-
¡û
>C181227677
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
864298
864388
+
Ser
TGA
-
¡û
>C191004187
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
905587
905677
+
Ser
TGA
-
¡û
>C191004208
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1545477
1545387
-
Ser
TGA
-
¡û
>C191035492
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
428550
428640
+
Ser
TGA
-
¡û
>C191035534
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
1104388
1104298
-
Ser
TGA
-
¡û
>C191040477
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
4650
4740
+
Ser
TGA
-
¡û
>C191040522
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
640095
640005
-
Ser
TGA
-
¡û
>C191092628
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
835277
835367
+
Ser
TGA
-
¡û
>C191092644
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
1237476
1237566
+
Ser
TGA
-
¡û
>C191092691
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
520958
521048
+
Ser
TGA
-
¡û
>C191092707
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
923139
923229
+
Ser
TGA
-
¡û
>C191092811
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
371102
371192
+
Ser
TGA
-
¡û
>C191092827
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
773272
773362
+
Ser
TGA
-
¡û
>C191093022
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1325764
1325674
-
Ser
TGA
-
¡û
>C191093038
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
923585
923495
-
Ser
TGA
-
¡û
>C191134863
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
999248
999338
+
Ser
TGA
-
¡û
>C191134884
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1618660
1618570
-
Ser
TGA
-
¡û
>W09127592
ACLD01000009
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
79521
79611
+
Ser
TGA
[ENA]
¡û
>W1910471960
FXDK01000016
Bacillota
Latilactobacillus curvatus [FXDK]
11736
11826
+
Ser
TGA
[ENA]
¡û
>W1910751913
MKDL01000062
Bacillota
Latilactobacillus sakei RI-493 [MKDL]
12613
12703
+
Ser
TGA
[ENA]
¡û
>W1910751930
MKDM01000016
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
451
361
-
Ser
TGA
[ENA]
¡û
>W1910751976
MKDN01000033
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
573
663
+
Ser
TGA
[ENA]
¡û
>W1910751986
MKDN01000037
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
23716
23806
+
Ser
TGA
[ENA]
¡û
>W1910752008
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
26763
26673
-
Ser
TGA
[ENA]
¡û
>W1910752024
MKDO01000017
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
238
148
-
Ser
TGA
[ENA]
¡û
>W1910753026
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
870
960
+
Ser
TGA
[ENA]
¡û
>W1911493377
OBHJ01000004
Bacillota
Latilactobacillus sakei J18 [OBHJ]
108719
108809
+
Ser
TGA
[ENA]
¡û
>W1911493415
OBHK01000005
Bacillota
Latilactobacillus sakei J160x1 [OBHK]
106018
106108
+
Ser
TGA
[ENA]
¡û
>W1911493458
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
949
1039
+
Ser
TGA
[ENA]
¡û
>W1911493477
OBHL01000018
Bacillota
Latilactobacillus sakei J156 [OBHL]
47255
47345
+
Ser
TGA
[ENA]
¡û
>W1911493560
OBHN01000006
Bacillota
Latilactobacillus sakei J112 [OBHN]
146815
146905
+
Ser
TGA
[ENA]
¡û
>W1911533865
OKRC01000001
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
241614
241704
+
Ser
TGA
[ENA]
¡û
>W1911533906
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
26857
26767
-
Ser
TGA
[ENA]
¡û
>W1911551485
OVTU01000001
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
772464
772374
-
Ser
TGA
[ENA]
¡û
>W1911551510
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
978
1068
+
Ser
TGA
[ENA]
¡û
>W1911631479
PUFE01000027
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
282556
282466
-
Ser
TGA
[ENA]
¡û
>W1911706067
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
26711
26621
-
Ser
TGA
[ENA]
¡û
>W1911706077
QOSE01000024
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
298
208
-
Ser
TGA
[ENA]
¡û
>WENV11100306
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
851
941
+
Ser
TGA
[ENA]
¡û
>WENV11100323
AEKF01000074
Food metagenome, Jonggazip commercial cabbage kimchi
14026
14116
+
Ser
TGA
[ENA]
¡û
>W1511344720
JRFY01000058
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
3786
3696
-
Ser
TGA
[ENA]
¡û
>W1511344739
JRFY01000147
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
195
105
-
Ser
TGA
[ENA]
¡û
>W1511402284
JTJV01000054
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
18604
18694
+
Ser
TGA
[ENA]
¡û
>W1511402315
JTJV01000136
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
913
1003
+
Ser
TGA
[ENA]
¡û
>C161093444
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
483125
483215
+
Ser
TGA
-
¡û
>C161093485
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
1104126
1104036
-
Ser
TGA
-
¡û
>C161100153
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
577369
577459
+
Ser
TGA
[Ensembl]
¡û
>C161100176
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
1367811
1367901
+
Ser
TGA
[Ensembl]
¡û
>W121008305
AGBU01000048
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
3396
3486
+
Ser
TGA
[ENA]
¡û
>W121008323
AGBU01000098
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
856
946
+
Ser
TGA
[ENA]
¡û
>W1610031738
AYZB01000035
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
114593
114503
-
Ser
TGA
[ENA]
¡û
>W1610031747
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
19956
19864
-
Ser
TGA
[ENA]
¡û
>W1610034077
AZDL01000062
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
3426
3336
-
Ser
TGA
[ENA]
¡û
>W1610034150
AZDN01000001
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
251418
251508
+
Ser
TGA
[ENA]
¡û
>W1610036383
AZFG01000049
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
286396
286486
+
Ser
TGA
[ENA]
¡û
>W1610036411
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
891
981
+
Ser
TGA
[ENA]
¡û
>W1610045564
BBBQ01000037
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
3412
3322
-
Ser
TGA
[ENA]
¡û
>W1610045574
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
856
946
+
Ser
TGA
[ENA]
¡û
>W1610909548
LSFF01000010
Bacillota
Latilactobacillus sakei [LSFF]
3926
3836
-
Ser
TGA
[ENA]
¡û
>W1610909575
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
950
1040
+
Ser
TGA
[ENA]
¡û
>W1710028665
AYZB01000035
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
114593
114503
-
Ser
TGA
[ENA]
¡û
>W1710028674
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
19956
19864
-
Ser
TGA
[ENA]
¡û
>W1710031204
AZDL01000062
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
3426
3336
-
Ser
TGA
[ENA]
¡û
>W1710031277
AZDN01000001
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
251418
251508
+
Ser
TGA
[ENA]
¡û
>W1710033422
AZFG01000049
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
286396
286486
+
Ser
TGA
[ENA]
¡û
>W1710033450
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
891
981
+
Ser
TGA
[ENA]
¡û
>W1710042405
BBBQ01000037
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
3412
3322
-
Ser
TGA
[ENA]
¡û
>W1710042415
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
856
946
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK