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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58588 (85 seq.)
>W1710853229
LLWK01000038
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
627783
627868
+
Ser
GGA
[ENA]
¡û
>W1710914563
LNTP01000401
Bacteroidota
Flavobacterium psychrophilum [LNTP]
40681
40594
-
Ser
GGA
[ENA]
¡û
>W1710914599
LNTQ01000146
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
58134
58221
+
Ser
GGA
[ENA]
¡û
>W1711054002
LRTL01000006
Bacteroidota
Flavobacterium psychrophilum [LRTL]
340649
340734
+
Ser
GGA
[ENA]
¡û
>W131225428
AUDO01000009
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
37045
36958
-
Ser
GGA
[ENA]
¡û
>W1711431513
MIJV01000031
Bacteroidota
Flavobacterium psychrophilum [MIJV]
107885
107972
+
Ser
GGA
[ENA]
¡û
>W1711431542
MIJW01000027
Bacteroidota
Flavobacterium psychrophilum [MIJW]
112318
112403
+
Ser
GGA
[ENA]
¡û
>W1711712471
MTBY01000038
Bacteroidota
Flavobacterium psychrophilum [MTBY]
100132
100219
+
Ser
GGA
[ENA]
¡û
>W1711712504
MTBZ01000033
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
100776
100861
+
Ser
GGA
[ENA]
¡û
>W1711712593
MTCB01000020
Bacteroidota
Flavobacterium psychrophilum [MTCB]
106116
106203
+
Ser
GGA
[ENA]
¡û
>W1711712626
MTCC01000022
Bacteroidota
Flavobacterium psychrophilum [MTCC]
108286
108373
+
Ser
GGA
[ENA]
¡û
>W1711712642
MTCD01000064
Bacteroidota
Flavobacterium psychrophilum [MTCD]
1565
1478
-
Ser
GGA
[ENA]
¡û
>C009509
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
2624029
2624116
+
Ser
GGA
[Ensembl]
¡û
>WENV180391224
OBPM01046922
[OBPM] marine metagenome; ENVO:00002010
245
330
+
Ser
GGA
[ENA]
¢þ
>C181220269
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
2602337
2602422
+
Ser
GGA
-
¡û
>W1910184570
BJSV01000009
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
46854
46939
+
Ser
GGA
[ENA]
¡û
>W1910184612
BJSW01000010
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
47028
47113
+
Ser
GGA
[ENA]
¡û
>W1910184657
BJSX01000033
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
48218
48303
+
Ser
GGA
[ENA]
¡û
>W1910184704
BJSY01000049
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
46842
46927
+
Ser
GGA
[ENA]
¡û
>W1910184723
BJSZ01000007
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
24965
24880
-
Ser
GGA
[ENA]
¡û
>W1910184763
BJTA01000010
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
24965
24880
-
Ser
GGA
[ENA]
¡û
>W1910184865
BJTD01000003
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
1121
1036
-
Ser
GGA
[ENA]
¡û
>W1910184911
BJTE01000014
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
938
853
-
Ser
GGA
[ENA]
¡û
>W1910184958
BJTF01000027
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
790
705
-
Ser
GGA
[ENA]
¡û
>W1910502973
FYBY01000008
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
40610
40525
-
Ser
GGA
[ENA]
¡û
>W1910503015
FYBZ01000023
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
3188
3103
-
Ser
GGA
[ENA]
¡û
>W1910503053
FYCA01000041
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
35811
35726
-
Ser
GGA
[ENA]
¡û
>W1910503096
FYCB01000062
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
868
783
-
Ser
GGA
[ENA]
¡û
>W1910503111
FYCC01000022
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
168379
168294
-
Ser
GGA
[ENA]
¡û
>W1910503154
FYCD01000035
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
126467
126382
-
Ser
GGA
[ENA]
¡û
>W1910503181
FYCE01000040
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
244
159
-
Ser
GGA
[ENA]
¡û
>W1910503225
FYCF01000035
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
168431
168346
-
Ser
GGA
[ENA]
¡û
>W1910503254
FYCG01000038
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
56697
56782
+
Ser
GGA
[ENA]
¡û
>W1910503291
FYCH01000034
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
51569
51654
+
Ser
GGA
[ENA]
¡û
>W1910503321
FYCI01000042
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
67950
68035
+
Ser
GGA
[ENA]
¡û
>W1910503539
FYCN01000063
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
9099
9014
-
Ser
GGA
[ENA]
¡û
>W1910503555
FYCO01000003
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
51640
51725
+
Ser
GGA
[ENA]
¡û
>W1910503606
FYCP01000136
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
46736
46821
+
Ser
GGA
[ENA]
¡û
>W1910503622
FYCQ01000124
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
46748
46833
+
Ser
GGA
[ENA]
¡û
>W1910503637
FYCR01000026
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
13859
13944
+
Ser
GGA
[ENA]
¡û
>W1910503659
FYCS01000015
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
51569
51654
+
Ser
GGA
[ENA]
¡û
>W1910503723
FYCT01000062
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
46837
46922
+
Ser
GGA
[ENA]
¡û
>W1910503734
FYCU01000118
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
48212
48297
+
Ser
GGA
[ENA]
¡û
>W1910503759
FYCV01000140
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
197
112
-
Ser
GGA
[ENA]
¡û
>W1910503771
FYCW01000003
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
18590
18505
-
Ser
GGA
[ENA]
¡û
>W1910503807
FYCX01000001
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
49221
49306
+
Ser
GGA
[ENA]
¡û
>W1910503873
FYCY01000056
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
40608
40523
-
Ser
GGA
[ENA]
¡û
>W1910503908
FYCZ01000034
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
51569
51654
+
Ser
GGA
[ENA]
¡û
>W1910503917
FYDA01000001
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
854
769
-
Ser
GGA
[ENA]
¡û
>W1910503981
FYDB01000047
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
313346
313261
-
Ser
GGA
[ENA]
¡û
>W1910503992
FYDC01000003
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
168433
168348
-
Ser
GGA
[ENA]
¡û
>W1910504129
FYDF01000102
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
286
201
-
Ser
GGA
[ENA]
¡û
>W1910576496
JSCD01000009
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
25843
25758
-
Ser
GGA
[ENA]
¡û
>W1910576617
JSWL01000002
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
106116
106201
+
Ser
GGA
[ENA]
¡û
>W1910809510
MUHE01000025
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
790
705
-
Ser
GGA
[ENA]
¡û
>SRA1003537
SRR002327.6983
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
163
78
-
Ser
GGA
[SRA]
>C151018505
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
2611254
2611341
+
Ser
GGA
[Ensembl]
¡û
>C151018562
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
2535755
2535840
+
Ser
GGA
[Ensembl]
¡û
>C151030341
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2660832
2660919
+
Ser
GGA
[Ensembl]
¡û
>C151038971
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
2438523
2438610
+
Ser
GGA
[Ensembl]
¡û
>C151039007
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
2424927
2425014
+
Ser
GGA
[Ensembl]
¡û
>C151039044
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
2439873
2439960
+
Ser
GGA
[Ensembl]
¡û
>C151039536
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
2476838
2476925
+
Ser
GGA
[Ensembl]
¡û
>C151065061
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
2610301
2610388
+
Ser
GGA
-
¡û
>C151065109
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
2612618
2612705
+
Ser
GGA
-
¡û
>C151072389
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
2084730
2084815
+
Ser
GGA
-
¡û
>W1511357172
JRWA01000009
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
54457
54544
+
Ser
GGA
[ENA]
¡û
>W1511357214
JRWB01000025
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
54449
54536
+
Ser
GGA
[ENA]
¡û
>W1511357256
JRWC01000007
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
54442
54529
+
Ser
GGA
[ENA]
¡û
>W1511357304
JRWD01000118
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
16708
16793
+
Ser
GGA
[ENA]
¡û
>W1511357351
JRWE01000119
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
16708
16793
+
Ser
GGA
[ENA]
¡û
>W1511357398
JRWF01000112
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
16707
16792
+
Ser
GGA
[ENA]
¡û
>C161024428
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
2609797
2609884
+
Ser
GGA
-
¡û
>C161024476
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
2568760
2568847
+
Ser
GGA
-
¡û
>C161024524
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
2567394
2567481
+
Ser
GGA
-
¡û
>W1610062191
BCNG01000016
Bacteroidota
Flavobacterium psychrophilum [BCNG]
285
200
-
Ser
GGA
[ENA]
¡û
>W1610716353
LLWK01000038
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
627783
627868
+
Ser
GGA
[ENA]
¡û
>W1610772922
LNTP01000401
Bacteroidota
Flavobacterium psychrophilum [LNTP]
40681
40594
-
Ser
GGA
[ENA]
¡û
>W1610772958
LNTQ01000146
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
58134
58221
+
Ser
GGA
[ENA]
¡û
>W1610895190
LRTL01000006
Bacteroidota
Flavobacterium psychrophilum [LRTL]
340649
340734
+
Ser
GGA
[ENA]
¡û
>W1710059732
BCNG01000016
Bacteroidota
Flavobacterium psychrophilum [BCNG]
285
200
-
Ser
GGA
[ENA]
¡û
>W1710087863
BDSH01000014
Bacteroidota
Flavobacterium psychrophilum [BDSH]
43005
43090
+
Ser
GGA
[ENA]
¡û
>W1710507316
FMVE01000003
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
131890
131805
-
Ser
GGA
[ENA]
¡û
>W1710555826
FOJT01000003
Bacteroidota
Flavobacterium swingsii [FOJT]
234251
234164
-
Ser
GGA
[ENA]
¡û
>W1710585196
FQWE01000002
Bacteroidota
Flavobacterium segetis [FQWE]
352217
352130
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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