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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58592 (57 seq.)
>A171004699
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1211583
1211494
-
Leu
CAG
-
¡û
>A171004809
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1571014
1570929
-
Leu
CAG
-
¡û
>A171005017
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
1318870
1318785
-
Leu
CAG
-
¡û
>A171005069
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
1444799
1444714
-
Leu
CAG
-
¡û
>A171005205
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
2691117
2691202
+
Leu
CAG
-
¡û
>A171005280
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1658181
1658095
-
Leu
CAG
-
¡û
>A171005294
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
147752
147837
+
Leu
CAG
-
¡û
>WENV180346718
OBLN01246211
[OBLN] sediment metagenome; sediment
110
197
+
Leu
CAG
[ENA]
¢þ
>WENV170008270
AMZC01006862
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
27
112
+
Leu
CAG
[ENA]
¢þ
>At1393
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
4085009
4085093
+
Leu
CAG
[Ensembl]
¡û
>At1502
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
181284
181368
+
Leu
CAG
[Ensembl]
¡û
>W1910569286
JJOS01000012
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
81721
81635
-
Leu
CAG
[ENA]
¡û
>W1910569718
JJPA01000200
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
10208
10122
-
Leu
CAG
[ENA]
¡û
>W1910569761
JJPB01000086
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
68700
68786
+
Leu
CAG
[ENA]
¡û
>W1910569799
JJPC01000033
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
33040
32954
-
Leu
CAG
[ENA]
¡û
>W1910569864
JJPD01000145
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
71632
71546
-
Leu
CAG
[ENA]
¡û
>W1910569937
JJPE01000168
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
71552
71466
-
Leu
CAG
[ENA]
¡û
>W1910569945
JJPF01000002
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
36840
36926
+
Leu
CAG
[ENA]
¡û
>W1910570037
JJPG01000144
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
37521
37607
+
Leu
CAG
[ENA]
¡û
>W1910570053
JJPH01000022
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
36035
36121
+
Leu
CAG
[ENA]
¡û
>W1910570109
JJPI01000048
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
65410
65325
-
Leu
CAG
[ENA]
¡û
>W1910570169
JJPJ01000053
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
49499
49584
+
Leu
CAG
[ENA]
¡û
>W1910570237
JJPK01000113
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
48095
48180
+
Leu
CAG
[ENA]
¡û
>W1910570288
JJPL01000134
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
60531
60617
+
Leu
CAG
[ENA]
¡û
>W1910570346
JJPM01000339
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
2301
2215
-
Leu
CAG
[ENA]
¡û
>W1910570388
JJPN01000144
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
19582
19497
-
Leu
CAG
[ENA]
¡û
>W1910570533
JJPQ01000103
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
40412
40497
+
Leu
CAG
[ENA]
¡û
>W1910570578
JJPR01000090
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
65505
65590
+
Leu
CAG
[ENA]
¡û
>W1910570644
JJPS01000214
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
1502
1417
-
Leu
CAG
[ENA]
¡û
>W1910570725
JJPU01000119
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
2599
2514
-
Leu
CAG
[ENA]
¡û
>W1910570760
JJPV01000021
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
48113
48198
+
Leu
CAG
[ENA]
¡û
>W1910570808
JJPW01000012
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
49457
49542
+
Leu
CAG
[ENA]
¡û
>W1910570876
JJPX01000079
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
1502
1417
-
Leu
CAG
[ENA]
¡û
>W1910570928
JJPY01000064
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
65573
65658
+
Leu
CAG
[ENA]
¡û
>W1910571000
JJPZ01000158
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
24056
23971
-
Leu
CAG
[ENA]
¡û
>W1910571045
JJQA01000117
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
181845
181930
+
Leu
CAG
[ENA]
¡û
>W1910571065
JJQB01000029
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
66560
66645
+
Leu
CAG
[ENA]
¡û
>W1910571124
JJQC01000073
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
92562
92477
-
Leu
CAG
[ENA]
¡û
>W1910571192
JJQD01000158
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
52333
52419
+
Leu
CAG
[ENA]
¡û
>W1910571249
JJQE01000161
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
37565
37651
+
Leu
CAG
[ENA]
¡û
>W1910571267
JJQF01000036
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
51682
51767
+
Leu
CAG
[ENA]
¡û
>W1910571384
JJQH01000125
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
15360
15275
-
Leu
CAG
[ENA]
¡û
>W1910571432
JJQI01000053
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
51673
51758
+
Leu
CAG
[ENA]
¡û
>W1910571562
JJQK01000285
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
5019
5104
+
Leu
CAG
[ENA]
¡û
>W1910571662
JJQM01000126
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
4665
4750
+
Leu
CAG
[ENA]
¡û
>W1910571718
JJQN01000116
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
78800
78715
-
Leu
CAG
[ENA]
¡û
>W1910571747
JJQO01000047
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
4665
4750
+
Leu
CAG
[ENA]
¡û
>W1910571828
JJQP01000201
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
2813
2898
+
Leu
CAG
[ENA]
¡û
>W1910572072
JJQU01000093
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
67885
67799
-
Leu
CAG
[ENA]
¡û
>W1910572146
JJQV01000133
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
102340
102425
+
Leu
CAG
[ENA]
¡û
>W1910572169
JJQW01000059
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
3491
3576
+
Leu
CAG
[ENA]
¡û
>W1910572232
JJQX01000190
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
3487
3572
+
Leu
CAG
[ENA]
¡û
>W1910572344
JJRA01000002
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
81147
81062
-
Leu
CAG
[ENA]
¡û
>W1910575059
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3717811
3717896
+
Leu
CAG
[ENA]
¡û
>W1610045106
BBBC01000039
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
21244
21159
-
Leu
CAG
[ENA]
¡û
>W1610045126
BBBC01000129
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
10332
10417
+
Pseudo
CAG
[ENA]
¡û
>W1610046917
BBCW01000088
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
4758
4672
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK