This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58698 (63 seq.)
>W1710882909
LMVE01000134
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
22126
22212
+
Ser
TGA
[ENA]
¡û
>W131058316
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
3599598
3599684
+
Ser
TGA
[ENA]
¡û
>W131089988
AOFE01000051
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
1523
1437
-
Ser
TGA
[ENA]
¡û
>W1711081214
LSSA01000026
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
42850
42936
+
Ser
TGA
[ENA]
¡û
>W1711116519
LUBZ01000004
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
151276
151190
-
Ser
TGA
[ENA]
¡û
>W1711261776
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
3224200
3224286
+
Ser
TGA
[ENA]
¡û
>W1711335593
MBQX01000079
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
29329
29415
+
Ser
TGA
[ENA]
¡û
>W1711335649
MBQY01000090
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
91582
91668
+
Ser
TGA
[ENA]
¡û
>W1711711291
MTAV01000002
Cyanobacteriota
Nostoc sp. T09 [MTAV]
41313
41399
+
Ser
TGA
[ENA]
¡û
>W1711711403
MTAW01000207
Cyanobacteriota
Nostoc sp. 106C [MTAW]
17069
17155
+
Ser
TGA
[ENA]
¡û
>W1711711463
MTAX01000111
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
36239
36325
+
Ser
TGA
[ENA]
¡û
>C001235
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
2470973
2470889
-
Ser
TGA
[Ensembl]
¡û
>w021709
AAVW01000118
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
3711
3622
-
Ser
TGA
[ENA]
¡û
>w002299
AAAY02000122
Cyanobacteriota
Nostoc punctiforme [AAAY]
15897
15808
-
Ser
TGA
[ENA]
¡û
>C08006915
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7976076
7976162
+
Ser
TGA
[Ensembl]
¡û
>WENV170995488
MWWF01013867
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1277
1191
-
Ser
TGA
[ENA]
¢þ
>WENV171003099
NNBT01000920
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1837
1923
+
Ser
TGA
[ENA]
¢þ
>WENV171003388
NNBT01008655
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
445
359
-
Ser
TGA
[ENA]
¢þ
>WENV171003481
NNBU01000088
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
4444
4530
+
Ser
TGA
[ENA]
¢þ
>WENV171003670
NNBV01000007
[NNBV] plant metagenome; symbiotic tissue sample KVS11
10211
10297
+
Ser
TGA
[ENA]
¢þ
>C181004769
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
7080865
7080779
-
Ser
TGA
-
¡û
>C181043639
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
3447709
3447623
-
Ser
TGA
-
¡û
>C181078428
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
6695793
6695707
-
Ser
TGA
-
¡û
>C181105223
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2242221
2242307
+
Ser
TGA
-
¡û
>C181137763
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
1161038
1160952
-
Ser
TGA
-
¡û
>C181137848
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5119158
5119072
-
Ser
TGA
-
¡û
>W09101165
AAEA01000023
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
23573
23659
+
Ser
TGA
[ENA]
¡û
>C191083023
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3312446
3312532
+
Ser
TGA
-
¡û
>W09125754
ACIR01000050
Cyanobacteriota
Trichormus azollae 708 [ACIR]
17783
17697
-
Ser
TGA
[ENA]
¡û
>W1910020539
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
1310026
1309940
-
Ser
TGA
[ENA]
¡û
>W1910646701
LWSY01000177
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
33805
33891
+
Ser
TGA
[ENA]
¡û
>W1910805282
MTPU01000053
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
136280
136194
-
Ser
TGA
[ENA]
¡û
>W1910859267
NBYN01000015
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
89400
89314
-
Ser
TGA
[ENA]
¡û
>W1910943164
NJHS01000007
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
64165
64079
-
Ser
TGA
[ENA]
¡û
>W1910943204
NJHT01000007
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
38845
38931
+
Ser
TGA
[ENA]
¡û
>W1910943240
NJHU01000007
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
38833
38919
+
Ser
TGA
[ENA]
¡û
>W1910943297
NJHV01000183
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
18699
18613
-
Ser
TGA
[ENA]
¡û
>W1910943337
NJHW01000051
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
62149
62235
+
Ser
TGA
[ENA]
¡û
>W1910943395
NJHX01000454
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
79606
79692
+
Ser
TGA
[ENA]
¡û
>W1910943415
NJHY01000035
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
74518
74604
+
Ser
TGA
[ENA]
¡û
>W1910943466
NJHZ01000241
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
78644
78730
+
Ser
TGA
[ENA]
¡û
>W1910943482
NJIA01000003
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
38827
38913
+
Ser
TGA
[ENA]
¡û
>W1911118658
NOLI01000049
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
7898
7984
+
Ser
TGA
[ENA]
¡û
>W1911118734
NOLJ01000002
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
908450
908536
+
Ser
TGA
[ENA]
¡û
>W1911118807
NOLK01000025
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
23341
23427
+
Ser
TGA
[ENA]
¡û
>W1911153657
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
2760086
2760172
+
Ser
TGA
[ENA]
¡û
>W1911153679
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
428987
429073
+
Ser
TGA
[ENA]
¡û
>W1911244259
NSHF01000039
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
18444
18358
-
Ser
TGA
[ENA]
¡û
>W1810355656
PVMC01000001
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
67314
67228
-
Ser
TGA
[ENA]
¡û
>W10106024
ACYA01000023
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
38379
38465
+
Ser
TGA
[ENA]
¡û
>W10106071
ACYB01000035
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
506157
506071
-
Ser
TGA
[ENA]
¡û
>W11108347
ACYA01000023
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
38379
38465
+
Ser
TGA
[ENA]
¡û
>W11108394
ACYB01000035
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
506157
506071
-
Ser
TGA
[ENA]
¡û
>C11115541
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
2999064
2999150
+
Ser
TGA
[Ensembl]
¡û
>C161005353
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
3564858
3564772
-
Ser
TGA
[Ensembl]
¡û
>W1610084854
CDHJ01000084
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
50738
50652
-
Ser
TGA
[ENA]
¡û
>W1610656804
LJOR01000043
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
172740
172826
+
Ser
TGA
[ENA]
¡û
>W1610744835
LMVE01000134
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
22126
22212
+
Ser
TGA
[ENA]
¡û
>W1610927761
LUBZ01000004
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
151276
151190
-
Ser
TGA
[ENA]
¡û
>W1610979389
LWAJ01000129
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
15735
15649
-
Ser
TGA
[ENA]
¡û
>W1611023751
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
3224200
3224286
+
Ser
TGA
[ENA]
¡û
>W1710087996
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
2181971
2181885
-
Ser
TGA
[ENA]
¡û
>W1710089716
CDHJ01000084
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
50738
50652
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK