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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5873 (38 seq.)
>W1711187515
LWPO01000001
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
86744
86650
-
SeC(p)
TCA
[ENA]
¡û
>W1712109997
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
907539
907445
-
SeC(p)
TCA
[ENA]
¡û
>WENV180137763
OATP01000440
[OATP] human gut metagenome; faeces
6603
6697
+
SeC
TCA
[ENA]
¢þ
>WENV180143593
OATY01000006
[OATY] human gut metagenome; faeces
269271
269177
-
SeC
TCA
[ENA]
¢þ
>WENV180211349
OBAM01003875
[OBAM] human gut metagenome; human gut
185
91
-
SeC
TCA
[ENA]
¢þ
>WENV183356904
OLXF01002267
[OLXF] human gut metagenome; feces
6668
6762
+
SeC
TCA
[ENA]
¢þ
>WENV183371348
OLXV01018779
[OLXV] human gut metagenome; feces
628
722
+
SeC
TCA
[ENA]
¢þ
>W141350027
JCKH01000007
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
252530
252436
-
SeC(p)
TCA
[ENA]
¡û
>WENV183521761
OMNU01025868
[OMNU] human gut metagenome; feces
661
567
-
SeC
TCA
[ENA]
¢þ
>C181002165
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
4426140
4426046
-
SeC
TCA
-
¡û
>C181055083
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
4340007
4339913
-
SeC
TCA
-
¡û
>C191008129
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
3587152
3587058
-
Sec
TCA
-
¡û
>C191152030
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
4394048
4393954
-
Sec
TCA
-
¡û
>W141710464
JMPK01000013
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
28630
28536
-
SeC(p)
TCA
[ENA]
¡û
>W1910211944
FMIQ01000064
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
97588
97682
+
Sec
TCA
[ENA]
¡û
>W1911179162
NQMS01000004
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
235699
235605
-
Sec
TCA
[ENA]
¡û
>W1911397604
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
1153667
1153761
+
Sec
TCA
[ENA]
¡û
>W1810032549
BGWW01000005
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
125533
125439
-
Sec
TCA
[ENA]
¡û
>W1810758410
QPIR01000145
Gammaproteobacteria
Hafnia paralvei C2 [QPIR]
95514
95420
-
Sec
TCA
[ENA]
¡û
>W1810758473
QPIS01000140
Gammaproteobacteria
Hafnia paralvei C3 [QPIS]
65969
65875
-
Sec
TCA
[ENA]
¡û
>W1810758534
QPIT01000107
Gammaproteobacteria
Hafnia paralvei C5 [QPIT]
6965
7059
+
Sec
TCA
[ENA]
¡û
>W1810758596
QPIU01000107
Gammaproteobacteria
Hafnia paralvei C8 [QPIU]
6965
7059
+
Sec
TCA
[ENA]
¡û
>W1810758655
QPIV01000107
Gammaproteobacteria
Hafnia paralvei C9 [QPIV]
6965
7059
+
Sec
TCA
[ENA]
¡û
>W1810784905
QRAZ01002987
Gammaproteobacteria
Hafnia paralvei C10 [QRAZ]
6965
7059
+
Sec
TCA
[ENA]
¡û
>C151057776
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
4694973
4694879
-
SeC
TCA
[Ensembl]
¡û
>W11113897
ADCU01000024
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
80255
80161
-
SeC(p)
TCA
[ENA]
¡û
>W1511399512
JTET01000002
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
19807
19901
+
SeC
TCA
[ENA]
¡û
>W1511399623
JTEU02000009
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
23559
23653
+
SeC
TCA
[ENA]
¡û
>W1511474595
JWBZ01000040
Gammaproteobacteria
Hafnia paralvei 1133_RAQU [JWBZ]
17950
17856
-
SeC
TCA
[ENA]
¡û
>W1511478110
JWGZ01000018
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
43950
43856
-
SeC
TCA
[ENA]
¡û
>W1511586374
LAZF01000016
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
110165
110071
-
SeC
TCA
[ENA]
¡û
>W1511586416
LAZG01000006
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
256706
256612
-
SeC
TCA
[ENA]
¡û
>C161065232
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
1201772
1201866
+
SeC(p)
TCA
-
¡û
>C161074169
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
820729
820823
+
SeC(p)
TCA
-
¡û
>C161086839
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
1634574
1634668
+
SeC(p)
TCA
-
¡û
>W121008390
AGCI01000027
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
94232
94138
-
SeC
TCA
[ENA]
¡û
>W1610994650
LXET01000004
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
6638
6732
+
SeC(p)
TCA
[ENA]
¡û
>W1610994952
LXEX01000022
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
30404
30310
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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