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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58775 (27 seq.)
>WENV180015899
FSTQ01000165
[FSTQ] metagenome; soil
9500
9583
+
Leu
CAG
[ENA]
¢þ
>WENV180029045
FTJI01007372
[FTJI] metagenome; soil
56
139
+
Leu
CAG
[ENA]
¢þ
>WENV180029319
FTJI01598330
[FTJI] metagenome; soil
54
137
+
Leu
CAG
[ENA]
¢þ
>WENV180695516
OCZS013588665
[OCZS] soil metagenome; soil
70
156
+
Leu
CAG
[ENA]
¢þ
>W141073130
ASRX01000043
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
71528
71614
+
Leu
CAG
[ENA]
¡û
>C08008944
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
6036965
6036882
-
Leu
CAG
[Ensembl]
¡û
>C181012513
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
7295140
7295056
-
Leu
CAG
-
¡û
>C191010033
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
5264725
5264639
-
Leu
CAG
-
¡û
>C191010093
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
7581623
7581537
-
Leu
CAG
-
¡û
>C151092013
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
7021164
7021078
-
Leu
CAG
-
¡û
>C131010781
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
7417410
7417324
-
Leu
CAG
[Ensembl]
¡û
>W1610520413
JELX01004468
Myxococcota
Sorangium cellulosum [JELX]
1536
1450
-
Leu
CAG
[ENA]
¡û
>W1610520417
JELY01000473
Myxococcota
Sorangium cellulosum [JELY]
3074
2988
-
Leu
CAG
[ENA]
¡û
>W1610520474
JELZ01000559
Myxococcota
Sorangium cellulosum [JELZ]
3561
3647
+
Leu
CAG
[ENA]
¡û
>W1610520531
JEMA01000708
Myxococcota
Sorangium cellulosum [JEMA]
6738
6652
-
Leu
CAG
[ENA]
¡û
>W1610520582
JEMB01002333
Myxococcota
Sorangium cellulosum [JEMB]
2941
2855
-
Leu
CAG
[ENA]
¡û
>W1610520614
JEMC01000756
Myxococcota
Sorangium cellulosum [JEMC]
1546
1460
-
Leu
CAG
[ENA]
¡û
>W1610520681
JEMD01001602
Myxococcota
Sorangium cellulosum [JEMD]
3040
2954
-
Leu
CAG
[ENA]
¡û
>W1610520752
JEME01002658
Myxococcota
Sorangium cellulosum [JEME]
3039
2953
-
Leu
CAG
[ENA]
¡û
>W1710615891
JELX01004468
Myxococcota
Sorangium cellulosum [JELX]
1536
1450
-
Leu
CAG
[ENA]
¡û
>W1710615895
JELY01000473
Myxococcota
Sorangium cellulosum [JELY]
3074
2988
-
Leu
CAG
[ENA]
¡û
>W1710615952
JELZ01000559
Myxococcota
Sorangium cellulosum [JELZ]
3561
3647
+
Leu
CAG
[ENA]
¡û
>W1710616009
JEMA01000708
Myxococcota
Sorangium cellulosum [JEMA]
6738
6652
-
Leu
CAG
[ENA]
¡û
>W1710616060
JEMB01002333
Myxococcota
Sorangium cellulosum [JEMB]
2941
2855
-
Leu
CAG
[ENA]
¡û
>W1710616092
JEMC01000756
Myxococcota
Sorangium cellulosum [JEMC]
1546
1460
-
Leu
CAG
[ENA]
¡û
>W1710616159
JEMD01001602
Myxococcota
Sorangium cellulosum [JEMD]
3040
2954
-
Leu
CAG
[ENA]
¡û
>W1710616230
JEME01002658
Myxococcota
Sorangium cellulosum [JEME]
3039
2953
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK